Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G26590 931 / 0 ATOPT5 ARABIDOPSIS THALIANA OLIGOPEPTIDE TRANSPORTER 5, oligopeptide transporter 5 (.1) AT5G55930 908 / 0 ATOPT1 ARABIDOPSIS THALIANA OLIGOPEPTIDE TRANSPORTER 1, oligopeptide transporter 1 (.1) AT4G16370 702 / 0 ATOPT3 oligopeptide transporter (.1) AT1G09930 701 / 0 ATOPT2 oligopeptide transporter 2 (.1) AT4G10770 699 / 0 ATOPT7 ARABIDOPSIS THALIANA OLIGOPEPTIDE TRANSPORTER 7, oligopeptide transporter 7 (.1) AT4G27730 677 / 0 ATOPT6 ARABIDOPSIS THALIANA OLIGOPEPTIDE TRANSPORTER 6, oligopeptide transporter 1 (.1) AT5G64410 672 / 0 ATOPT4 ARABIDOPSIS THALIANA OLIGOPEPTIDE TRANSPORTER 4, oligopeptide transporter 4 (.1) AT5G53520 672 / 0 ATOPT8 oligopeptide transporter 8 (.1) AT5G53510 632 / 0 ATOPT9 oligopeptide transporter 9 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10032586 [exp] 1321 / 0 AT4G26590 1004 / 0.0 ARABIDOPSIS THALIANA OLIGOPEPTIDE TRANSPORTER 5, oligopeptide transporter 5 (.1) Lus10043161 [exp] 1245 / 0 AT4G26590 951 / 0.0 ARABIDOPSIS THALIANA OLIGOPEPTIDE TRANSPORTER 5, oligopeptide transporter 5 (.1) Lus10022541 [exp] 1088 / 0 AT4G26590 1066 / 0.0 ARABIDOPSIS THALIANA OLIGOPEPTIDE TRANSPORTER 5, oligopeptide transporter 5 (.1) Lus10022543 [exp] 1055 / 0 AT4G26590 1084 / 0.0 ARABIDOPSIS THALIANA OLIGOPEPTIDE TRANSPORTER 5, oligopeptide transporter 5 (.1) Lus10031978 [exp] 1011 / 0 AT4G26590 1066 / 0.0 ARABIDOPSIS THALIANA OLIGOPEPTIDE TRANSPORTER 5, oligopeptide transporter 5 (.1) Lus10014885 [exp] 1003 / 0 AT4G26590 961 / 0.0 ARABIDOPSIS THALIANA OLIGOPEPTIDE TRANSPORTER 5, oligopeptide transporter 5 (.1) Lus10016632 [exp] 980 / 0 AT4G26590 981 / 0.0 ARABIDOPSIS THALIANA OLIGOPEPTIDE TRANSPORTER 5, oligopeptide transporter 5 (.1) Lus10016633 [exp] 979 / 0 AT4G26590 1087 / 0.0 ARABIDOPSIS THALIANA OLIGOPEPTIDE TRANSPORTER 5, oligopeptide transporter 5 (.1) Lus10022544 [exp] 977 / 0 AT4G26590 1079 / 0.0 ARABIDOPSIS THALIANA OLIGOPEPTIDE TRANSPORTER 5, oligopeptide transporter 5 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G369700 [exp] 971 / 0 AT4G26590 1039 / 0.0 ARABIDOPSIS THALIANA OLIGOPEPTIDE TRANSPORTER 5, oligopeptide transporter 5 (.1) Potri.001G370100 [exp] 967 / 0 AT4G26590 1006 / 0.0 ARABIDOPSIS THALIANA OLIGOPEPTIDE TRANSPORTER 5, oligopeptide transporter 5 (.1) Potri.016G004800 [exp] 910 / 0 AT4G26590 988 / 0.0 ARABIDOPSIS THALIANA OLIGOPEPTIDE TRANSPORTER 5, oligopeptide transporter 5 (.1) Potri.006G003700 [exp] 803 / 0 AT4G26590 863 / 0.0 ARABIDOPSIS THALIANA OLIGOPEPTIDE TRANSPORTER 5, oligopeptide transporter 5 (.1) Potri.007G056900 [exp] 718 / 0 AT4G10770 1055 / 0.0 ARABIDOPSIS THALIANA OLIGOPEPTIDE TRANSPORTER 7, oligopeptide transporter 7 (.1) Potri.003G145500 [exp] 714 / 0 AT4G10770 1197 / 0.0 ARABIDOPSIS THALIANA OLIGOPEPTIDE TRANSPORTER 7, oligopeptide transporter 7 (.1) Potri.006G006000 [exp] 695 / 0 AT4G16370 1284 / 0.0 oligopeptide transporter (.1) Potri.012G019500 [exp] 694 / 0 AT4G27730 1092 / 0.0 ARABIDOPSIS THALIANA OLIGOPEPTIDE TRANSPORTER 6, oligopeptide transporter 1 (.1) Potri.002G109300 [exp] 691 / 0 AT1G09930 1114 / 0.0 oligopeptide transporter 2 (.1) Potri.016G006500 [exp] 690 / 0 AT4G16370 1305 / 0.0 oligopeptide transporter (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03169 [flax] [poplar] OPT OPT oligopeptide transporter protein
Representative CDS sequence Show only first row Show all	>Lus10032585 pacid=23146346 polypeptide=Lus10032585 locus=Lus10032585.g ID=Lus10032585.BGIv1.0 annot-version=v1.0 ATGGGGAGTTTACCAGGGAACCAGCTGGACGTGATGGTCTCTGAATCTCAATTCTCAGACGAAACCCACAGCTTCGATGCTGCGAAAGTTGGTATGCATA CATATGTAGTCAGTTGCGTTCATATATATCGAGTTATTTTTCTAGTTCTTACAAACTATTCACACTCCCTCCAAACAGTGAAAGAAGAAGAAGAAGAAGA AGAAGAAGAGAACGACAGCCCAATTGAGGAAGTGAGGCTGACAGTACCAACAACCGACGATCCAACCTTGCCCGCACTGACATTTCGGACATGGGTTCTA GGGCTATGTTCGTGCATCCTCCTGTCGGTTTTAAACCAGTTCTTCGGTTACCGTTACAACGGTCTGTACGTGGGATCGACCTCTGCGCAGATTCTGGTGT TGCCATTAGGCCAGTTGATGGCCGCCTCGTTACCGACAACCAGGTTCAGATTCCCGTTGACCAAGTGGTCGTTTACGTTGAATCCGGGGCCGTTCAATGT GAAAGAACATGTGTTGATCACCATATTTGCCAACTGTGGAGCTGATGGGATATTGGCACTTGTTATTGTCACTGCTGTCAGGGCCTTCTACCACAGAAGC ATCCATGTTGTGGCCGCTTTGTTACTCGTGTTCAGCACTCAGCTTCTTGGGTATGGATGGGCTGGAATCTTCAGGAAAATTCTGGTGGATTCTCCTCATA TGTGGTGGCCTGGAAGTCTGCCTCAAGTTTCACTCTTCAGGGCATTGCATGAAAAGGAGAAACGGCCAAAGGGAGGACAAACGAGACTACAGTTCTTCAC ACTAGTATGCATATCAAGCTTTGCATATTACATAGTTCCAGGCTACTTATTCCCATCCATATCGGCACTTTCATTCGTGTGTTGGATTTGGAAGGACTCC ATCACTGCTCAGCAGATCGGATCTGGGCTGAATGGACTCGGCATTGGTTCGTTCGGTCTCGACTGGTCTACCATTGCCGGATTCGTAGGGAGCCCTCTTG CAACCCCATTGTTTGCTATCCTCAACACCATGGGTGGCTTTTTCCTGTTTGTTTATGTCATTCTCCCAATTGCTTACTGGAAGAATGCATTCAATGCAAG GAGTTTCCCCATGCTCTCTCAACAGACTTTTGATAGCTCTGGTCAACCATACAATATCACCAGGATTCTTAACCAGAAAGAGTTCAGCATTGACCTCGGT GAATATGAAGATTACAGCAAGCTCTATCTTAGTTTCACTTTTGCGTTCAAATATGGGATCGCCTTTGCTGCTTTTATGGCGACTTTAGTCCATGTTGCAC TCTTTGATGGAAAATCTATTTGGGAACTGTTGAAGAGGGCATCTACTGGAATGAAAGACCAATTCAGCGATGTTCATACTAGAATAATGAAGAAGAACTA TGAAGCTGTTCCTCAATGGTGGTTTTTGGCGATAATGATAGTATCATTGGCACTTTCTTTCCTTGCAACACAAGGATTCAACAGACAACTTCAGCTTCCA TGGTGGGGACTCATTATGTCATGTGCCATAGCATTTGTTGTCACCTTGCCCACTGGGATACTTGTTGCCTCTGCAAATCAGGGAATCGGGATAAACATCA TCACAGAGCTGATAATCGGTTACTTATACCCCGGCAGACCAGTTGCCAACGTGGCATTCAAGACGTACGGAACAATTAGCATGTGGCAAGCCCTGAGCTT CTTATCAGACTTCAAGCTAGGCCATTACATGAAAGTTGCACCAAAATCCATGTTCAAGGTTCAACTTGTGGGCACAGTGGTAGCATCCTTTGTCCAGTTC GGAACCACATGGTGGATACTATCAAGCATCAAAGACATATGCGACACGACCAAACTACCCAAGGGAAGTCCATGGACATGTCCTGGATACGATGTTTTCT ACAGTGCATCAATCATCTGGGGAGTCGTGGGACCGCTCAGAATCTTCAACGTTCGAGGGGTGTACCCGCAGATGAACTGGTTCTTCCTCATCGGCACATT TGCTCCGGTTCCGGTCTGGGTGCTGTCGAGGATGTACCCAGAGAAGAAATGGATAAGGATGATTTACATGCCAATCATAATGTCCGGAATGGGTGGCCTG CTGCCGGCTAAGCCGATTCACTTCTTGTCATGGGGAGCTGTGGGTGTGTTCTTCAACTACTATGTTTACAGCAAGTACAAAGGATGGTGGGCTAGGCATA CTTACATTCTGTCGGCGGCGTTGGATGTTGGGATTGCATTCATGGGGTTGTTGCTTTACGTGACTCTTCAGAACAAAGAGATCTACGGGCCGAAATGGTG GGGACTTCAAGCTGATGACCATTGCCCTTTAGCTAAATGCCCAACTGTGCCTGGGATCTTTGTCAAAGGATGTCCTGCTATTCACTGA
AA sequence Show only first row Show all	>Lus10032585 pacid=23146346 polypeptide=Lus10032585 locus=Lus10032585.g ID=Lus10032585.BGIv1.0 annot-version=v1.0 MGSLPGNQLDVMVSESQFSDETHSFDAAKVGMHTYVVSCVHIYRVIFLVLTNYSHSLQTVKEEEEEEEEENDSPIEEVRLTVPTTDDPTLPALTFRTWVL GLCSCILLSVLNQFFGYRYNGLYVGSTSAQILVLPLGQLMAASLPTTRFRFPLTKWSFTLNPGPFNVKEHVLITIFANCGADGILALVIVTAVRAFYHRS IHVVAALLLVFSTQLLGYGWAGIFRKILVDSPHMWWPGSLPQVSLFRALHEKEKRPKGGQTRLQFFTLVCISSFAYYIVPGYLFPSISALSFVCWIWKDS ITAQQIGSGLNGLGIGSFGLDWSTIAGFVGSPLATPLFAILNTMGGFFLFVYVILPIAYWKNAFNARSFPMLSQQTFDSSGQPYNITRILNQKEFSIDLG EYEDYSKLYLSFTFAFKYGIAFAAFMATLVHVALFDGKSIWELLKRASTGMKDQFSDVHTRIMKKNYEAVPQWWFLAIMIVSLALSFLATQGFNRQLQLP WWGLIMSCAIAFVVTLPTGILVASANQGIGINIITELIIGYLYPGRPVANVAFKTYGTISMWQALSFLSDFKLGHYMKVAPKSMFKVQLVGTVVASFVQF GTTWWILSSIKDICDTTKLPKGSPWTCPGYDVFYSASIIWGVVGPLRIFNVRGVYPQMNWFFLIGTFAPVPVWVLSRMYPEKKWIRMIYMPIIMSGMGGL LPAKPIHFLSWGAVGVFFNYYVYSKYKGWWARHTYILSAALDVGIAFMGLLLYVTLQNKEIYGPKWWGLQADDHCPLAKCPTVPGIFVKGCPAIH

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G26590		ATOPT5	ARABIDOPSIS THALIANA OLIGOPEPT...		Lus10032585 [exp]	0	1
AT5G13170		SAG29, SWEET15,...	senescence-associated gene 29 ...		Lus10003143 [exp]	1.7	0.9287
AT2G40200	bHLH	bHLH051	basic helix-loop-helix (bHLH) ...		Lus10028978 [exp]	2.0	0.9004
AT1G69930		ATGSTU11	glutathione S-transferase TAU ...		Lus10026722 [exp]	3.2	0.8928
AT4G21960		PRXR1	Peroxidase superfamily protein...		Lus10006778 [exp]	4.2	0.9034
AT3G24770		CLE41	CLAVATA3/ESR-RELATED 41 (.1)		Lus10011868 [exp]	5.1	0.9146
AT2G36270	bZIP	EEL, GIA1, ABI5	GROWTH-INSENSITIVITY TO ABA 1,...		Lus10014194 [exp]	6.3	0.8880
AT3G58720			RING/U-box superfamily protein...		Lus10040151 [exp]	6.7	0.8822
AT1G73590		ATPIN1, PIN1	ARABIDOPSIS THALIANA PIN-FORME...		Lus10009054 [exp]	7.5	0.8764
					Lus10003132 [exp]	10.2	0.8882
AT4G12300		CYP706A4	"cytochrome P450, family 706, ...		Lus10024581 [exp]	12.5	0.8766

Compare expression of checked genes

Lus10032585 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.