Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G26590 927 / 0 ATOPT5 ARABIDOPSIS THALIANA OLIGOPEPTIDE TRANSPORTER 5, oligopeptide transporter 5 (.1) AT5G55930 909 / 0 ATOPT1 ARABIDOPSIS THALIANA OLIGOPEPTIDE TRANSPORTER 1, oligopeptide transporter 1 (.1) AT4G16370 712 / 0 ATOPT3 oligopeptide transporter (.1) AT4G10770 706 / 0 ATOPT7 ARABIDOPSIS THALIANA OLIGOPEPTIDE TRANSPORTER 7, oligopeptide transporter 7 (.1) AT1G09930 702 / 0 ATOPT2 oligopeptide transporter 2 (.1) AT4G27730 680 / 0 ATOPT6 ARABIDOPSIS THALIANA OLIGOPEPTIDE TRANSPORTER 6, oligopeptide transporter 1 (.1) AT5G53520 678 / 0 ATOPT8 oligopeptide transporter 8 (.1) AT5G64410 676 / 0 ATOPT4 ARABIDOPSIS THALIANA OLIGOPEPTIDE TRANSPORTER 4, oligopeptide transporter 4 (.1) AT5G53510 642 / 0 ATOPT9 oligopeptide transporter 9 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10032585 [exp] 1330 / 0 AT4G26590 1020 / 0.0 ARABIDOPSIS THALIANA OLIGOPEPTIDE TRANSPORTER 5, oligopeptide transporter 5 (.1) Lus10043161 [exp] 1269 / 0 AT4G26590 951 / 0.0 ARABIDOPSIS THALIANA OLIGOPEPTIDE TRANSPORTER 5, oligopeptide transporter 5 (.1) Lus10022541 [exp] 1072 / 0 AT4G26590 1066 / 0.0 ARABIDOPSIS THALIANA OLIGOPEPTIDE TRANSPORTER 5, oligopeptide transporter 5 (.1) Lus10022543 [exp] 1039 / 0 AT4G26590 1084 / 0.0 ARABIDOPSIS THALIANA OLIGOPEPTIDE TRANSPORTER 5, oligopeptide transporter 5 (.1) Lus10031978 [exp] 998 / 0 AT4G26590 1066 / 0.0 ARABIDOPSIS THALIANA OLIGOPEPTIDE TRANSPORTER 5, oligopeptide transporter 5 (.1) Lus10014885 [exp] 993 / 0 AT4G26590 961 / 0.0 ARABIDOPSIS THALIANA OLIGOPEPTIDE TRANSPORTER 5, oligopeptide transporter 5 (.1) Lus10016632 [exp] 981 / 0 AT4G26590 981 / 0.0 ARABIDOPSIS THALIANA OLIGOPEPTIDE TRANSPORTER 5, oligopeptide transporter 5 (.1) Lus10016633 [exp] 964 / 0 AT4G26590 1087 / 0.0 ARABIDOPSIS THALIANA OLIGOPEPTIDE TRANSPORTER 5, oligopeptide transporter 5 (.1) Lus10022544 [exp] 962 / 0 AT4G26590 1079 / 0.0 ARABIDOPSIS THALIANA OLIGOPEPTIDE TRANSPORTER 5, oligopeptide transporter 5 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G369700 [exp] 968 / 0 AT4G26590 1039 / 0.0 ARABIDOPSIS THALIANA OLIGOPEPTIDE TRANSPORTER 5, oligopeptide transporter 5 (.1) Potri.001G370100 [exp] 964 / 0 AT4G26590 1006 / 0.0 ARABIDOPSIS THALIANA OLIGOPEPTIDE TRANSPORTER 5, oligopeptide transporter 5 (.1) Potri.016G004800 [exp] 889 / 0 AT4G26590 988 / 0.0 ARABIDOPSIS THALIANA OLIGOPEPTIDE TRANSPORTER 5, oligopeptide transporter 5 (.1) Potri.006G003700 [exp] 789 / 0 AT4G26590 863 / 0.0 ARABIDOPSIS THALIANA OLIGOPEPTIDE TRANSPORTER 5, oligopeptide transporter 5 (.1) Potri.003G145500 [exp] 721 / 0 AT4G10770 1197 / 0.0 ARABIDOPSIS THALIANA OLIGOPEPTIDE TRANSPORTER 7, oligopeptide transporter 7 (.1) Potri.007G056900 [exp] 719 / 0 AT4G10770 1055 / 0.0 ARABIDOPSIS THALIANA OLIGOPEPTIDE TRANSPORTER 7, oligopeptide transporter 7 (.1) Potri.006G006000 [exp] 704 / 0 AT4G16370 1284 / 0.0 oligopeptide transporter (.1) Potri.012G019500 [exp] 701 / 0 AT4G27730 1092 / 0.0 ARABIDOPSIS THALIANA OLIGOPEPTIDE TRANSPORTER 6, oligopeptide transporter 1 (.1) Potri.016G006500 [exp] 698 / 0 AT4G16370 1305 / 0.0 oligopeptide transporter (.1) Potri.012G019700 [exp] 690 / 0 AT4G27730 1055 / 0.0 ARABIDOPSIS THALIANA OLIGOPEPTIDE TRANSPORTER 6, oligopeptide transporter 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03169 [flax] [poplar] OPT OPT oligopeptide transporter protein
Representative CDS sequence Show only first row Show all	>Lus10032586 pacid=23146254 polypeptide=Lus10032586 locus=Lus10032586.g ID=Lus10032586.BGIv1.0 annot-version=v1.0 ATGGGAACTTTACCAGGGAACCATGGCGTGGTGGAGGAAGACCACAGCTCCGATGCTGCGAAATTTGGGGACGAAACAGGGGAAGCAGAAGAGGAAGAAG AAGAAGAGAACGACAGCCCAATTGAGGAAGTGAGGCTGACAGTACCGACAACCGACGATCCGACCTTGCCCGCACTGACATTTCGGACATGGGTTCTAGG GCTATGTTCGTGCATCTTCCTGTCGGTTTTAAACCAGTTCTTCCGTTACCGTTACAACGGTCTGTACGTGGGGTCGACCTCTGCGCAGATTCTGGTGTTG CCATTAGGCCAGTTGATGGCCGCCTCGTTACCGACAACCAGGTTCAGATTCCCGTTGACCAAGTGGTCGTTCACGTTGAATCCGGGGCCGTTCAATGTGA AAGAACATGTGTTGATCACCATATGTGCCAACTGTGGAGCTGGCGGGATAGAGGGACTTTTTATTGTCACTGCCGTCAGGGCTTTCTACCACAGAAGCAT CAATGTTGTTGCTGCTTTGTTACTTGTGTTCAGCACTCAGCTTCTTGGATATGGATGGGCTGGGATCTTCAGGAAAATTCTGGTGGATTCTCCTCATATG TGGTGGCCTGGAAGTCTGCCACAAGTCTCACTCTTCAGGGCGTTGCATGAAAAGGAGGAACGGCCAAAGGGACGACAAACGAGGCTGCAGTTCTTCACCC TGGCATGCATATCAAGCTTTGCATATTACATAGTTCCAGGCTACTTGTTCCCATCCATATCGGCACTTTCATTCGTGTGCTGGATTTGGAAGGACTCCAT CACTGCTCAGCAGATCGGGTCGGGTCTGAACGGACTGGGCATCGGTTCGTTCGGTGTCGACTGGTCTACCATTTCCGGATTCTTAGGGAGCCCTCTTTCC ACCCCATTGTTTGCTATCCTCAACAGCATGGGTGGATTTTTCCTGTTTGTTTATATCATTCTCCCAATTGCTTACTGGAAGAATGCATTCAATGCAAGGA GTTTCCCCATGATCTCTCAACAGACTTTTGATAGCTCTGGTCAACCATACAATATCACCAGGATTCTTAACCAGAAAGAGTTCAGCATTGACCTTGGTGA ATATGAAGATTACAGCAAGCTCTATCTTAGTTTCACTTTTGCGTTCAAATATGGGATCGGCTTTGCTGCTTTTATGGCGACTTCAGTCCATGTTGCACTC TTTGATGGAAAATCTATTTGGGAAATGTTGAAGAGGGCATCTACTGGTATGAAGGACCAATTCAACGACGTTCATACTAGAACAATGAAGAAGAACTATG AAGCTGTTCCTCAATGGTGGTTTCTGGCGATAATGATAGTATCCTTAGCACTTTCTTTCCTTGCTACACAAGGATTCAACAGACAACTTCAGCTTCCATG GTGGGGACTCATTATGGCATGTGCCATAGCATTTGTTGTCACCTTGCCCACTGGGGTACTTGTTGCCTCTGCAAATCAAGGAATCGGACTAAACATCATC GTGGAGCTGATAATCGGTTACTTATACCCCGGCAGACCAGTTGCCAACGTGGCATTCAAGACGTACGGAACAATCAGCATGTGGCAAGCATTGAGCTTCT TATCGGACTTCAAGCTAGGCCATTACATGAAAGTTGCACCGAAATCCATGTTTACGATTCAGCTAGTGGGCACAGTGGTGGCATCCTTTGTCCAGTTCGG AACCACATGGTGGATGTTGGCAAGCATCAAAGACATATGTGACACGGCCAAACTACCCAAGGGAAGTCCATGGACATGTCCTGGATACGATGTTTTCTAC AGTGCATCGATCATCTGGGGAGTTGTGGGACCGCTTCGAATCTTCAACGTTCGAGGGGTGTACCCGCAGATGAACTGGTTCTTCCTTATCGGCACCTTTG TGCCGGTTCCAGCTTGGGTTCTGTCGAGGAAGTATCCAGAGAAGAAATGGATAAGGATGATTTACACGCCCATAATATTGTACGGAATGGGCGGGCTGCT GCCGGCTAAGCCCATTCACTACTTGTCATGGGGATCTGTGGGAGTGTTCTTCAACTACTATGTTTACACCAAGTACAAAGGATGGTGGGCTAGGCATACT TACATTCTGTCGGCGGCGTTGGATGTTGGGATTGCTTTCATGGGGTTGTTGCTTTACGTGACTCTTCAGAACAAAGAAATCTATGGGCCGCAATGGTGGG GACTTCAAGCTGATGACCATTGCCCTTTAGCTAAATGCCCAACTGTGCCTGGGATCTTTGTCCAAGGATGCCCTGCTATTCACTGA
AA sequence Show only first row Show all	>Lus10032586 pacid=23146254 polypeptide=Lus10032586 locus=Lus10032586.g ID=Lus10032586.BGIv1.0 annot-version=v1.0 MGTLPGNHGVVEEDHSSDAAKFGDETGEAEEEEEEENDSPIEEVRLTVPTTDDPTLPALTFRTWVLGLCSCIFLSVLNQFFRYRYNGLYVGSTSAQILVL PLGQLMAASLPTTRFRFPLTKWSFTLNPGPFNVKEHVLITICANCGAGGIEGLFIVTAVRAFYHRSINVVAALLLVFSTQLLGYGWAGIFRKILVDSPHM WWPGSLPQVSLFRALHEKEERPKGRQTRLQFFTLACISSFAYYIVPGYLFPSISALSFVCWIWKDSITAQQIGSGLNGLGIGSFGVDWSTISGFLGSPLS TPLFAILNSMGGFFLFVYIILPIAYWKNAFNARSFPMISQQTFDSSGQPYNITRILNQKEFSIDLGEYEDYSKLYLSFTFAFKYGIGFAAFMATSVHVAL FDGKSIWEMLKRASTGMKDQFNDVHTRTMKKNYEAVPQWWFLAIMIVSLALSFLATQGFNRQLQLPWWGLIMACAIAFVVTLPTGVLVASANQGIGLNII VELIIGYLYPGRPVANVAFKTYGTISMWQALSFLSDFKLGHYMKVAPKSMFTIQLVGTVVASFVQFGTTWWMLASIKDICDTAKLPKGSPWTCPGYDVFY SASIIWGVVGPLRIFNVRGVYPQMNWFFLIGTFVPVPAWVLSRKYPEKKWIRMIYTPIILYGMGGLLPAKPIHYLSWGSVGVFFNYYVYTKYKGWWARHT YILSAALDVGIAFMGLLLYVTLQNKEIYGPQWWGLQADDHCPLAKCPTVPGIFVQGCPAIH

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G26590		ATOPT5	ARABIDOPSIS THALIANA OLIGOPEPT...		Lus10032586 [exp]	0	1
AT5G22580			Stress responsive A/B Barrel D...		Lus10009407 [exp]	9.5	0.8251
AT2G40920			F-box and associated interacti...		Lus10001579 [exp]	11.6	0.7131
AT5G59320		LTP3	lipid transfer protein 3 (.1)		Lus10024201 [exp]	15.1	0.8147
AT5G14090			unknown protein		Lus10037042 [exp]	19.7	0.8013
					Lus10027893 [exp]	20.6	0.7826
AT5G67360		ARA12	Subtilase family protein (.1)		Lus10002393 [exp]	20.8	0.7704
AT1G68800	TCP	TCP12, BRC2, TC...	BRANCHED 2, TCP domain protein...		Lus10042962 [exp]	24.4	0.7930
AT4G11650		ATOSM34	osmotin 34 (.1)		Lus10017170 [exp]	29.3	0.7363
AT3G14810		MSL5	mechanosensitive channel of sm...		Lus10005632 [exp]	29.7	0.7794
AT4G19510			Disease resistance protein (TI...		Lus10008209 [exp]	30.1	0.7872

Compare expression of checked genes

Lus10032586 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.