Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G55840 406 / 2e-143 Sec14p-like phosphatidylinositol transfer family protein (.1.2) AT5G47730 401 / 6e-141 Sec14p-like phosphatidylinositol transfer family protein (.1.2.3) AT4G39180 82 / 4e-17 ATSEC14, SEC14 ARABIDOPSIS THALIANA SECRETION 14, Sec14p-like phosphatidylinositol transfer family protein (.1.2) AT4G34580 81 / 5e-17 SRH1, COW1 SHORT ROOT HAIR 1, CAN OF WORMS1, Sec14p-like phosphatidylinositol transfer family protein (.1) AT2G18180 79 / 3e-16 Sec14p-like phosphatidylinositol transfer family protein (.1) AT3G24840 79 / 4e-16 Sec14p-like phosphatidylinositol transfer family protein (.1) AT2G16380 78 / 7e-16 Sec14p-like phosphatidylinositol transfer family protein (.1) AT2G21520 77 / 2e-15 Sec14p-like phosphatidylinositol transfer family protein (.1.2) AT4G36490 76 / 3e-15 ATSFH12 SEC14-like 12 (.1) AT2G21540 76 / 4e-15 ATSFH3 SEC14-like 3 (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10043160 [exp] 559 / 0 AT1G55840 427 / 1e-147 Sec14p-like phosphatidylinositol transfer family protein (.1.2) Lus10016628 [exp] 436 / 8e-155 AT1G55840 415 / 5e-146 Sec14p-like phosphatidylinositol transfer family protein (.1.2) Lus10038752 [exp] 409 / 7e-144 AT5G47730 489 / 4e-175 Sec14p-like phosphatidylinositol transfer family protein (.1.2.3) Lus10039106 [exp] 402 / 4e-141 AT5G47730 459 / 2e-163 Sec14p-like phosphatidylinositol transfer family protein (.1.2.3) Lus10022533 [exp] 385 / 2e-136 AT1G55840 365 / 8e-129 Sec14p-like phosphatidylinositol transfer family protein (.1.2) Lus10022790 [exp] 83 / 2e-17 AT3G24840 650 / 0.0 Sec14p-like phosphatidylinositol transfer family protein (.1) Lus10028938 [exp] 82 / 4e-17 AT5G47510 422 / 9e-147 Sec14p-like phosphatidylinositol transfer family protein (.1) Lus10001584 [exp] 74 / 3e-15 AT1G14820 320 / 2e-111 Sec14p-like phosphatidylinositol transfer family protein (.1.2.3) Lus10028332 [exp] 76 / 4e-15 AT2G18180 657 / 0.0 Sec14p-like phosphatidylinositol transfer family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G369400 [exp] 448 / 2e-159 AT1G55840 466 / 4e-166 Sec14p-like phosphatidylinositol transfer family protein (.1.2) Potri.006G004000 [exp] 422 / 6e-149 AT5G47730 497 / 3e-178 Sec14p-like phosphatidylinositol transfer family protein (.1.2.3) Potri.016G005100 [exp] 402 / 2e-141 AT5G47730 501 / 7e-180 Sec14p-like phosphatidylinositol transfer family protein (.1.2.3) Potri.005G119700 [exp] 81 / 8e-17 AT4G36490 726 / 0.0 SEC14-like 12 (.1) Potri.003G076200 [exp] 79 / 3e-16 AT5G47510 397 / 1e-136 Sec14p-like phosphatidylinositol transfer family protein (.1) Potri.007G020300 [exp] 79 / 3e-16 AT4G36490 731 / 0.0 SEC14-like 12 (.1) Potri.005G230500 [exp] 79 / 4e-16 AT2G21520 756 / 0.0 Sec14p-like phosphatidylinositol transfer family protein (.1.2) Potri.004G157700 [exp] 77 / 1e-15 AT2G21520 908 / 0.0 Sec14p-like phosphatidylinositol transfer family protein (.1.2) Potri.003G162100 [exp] 76 / 1e-15 AT1G01630 356 / 2e-125 Sec14p-like phosphatidylinositol transfer family protein (.1) Potri.002G032600 [exp] 77 / 2e-15 AT2G21520 731 / 0.0 Sec14p-like phosphatidylinositol transfer family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0214 [flax] [poplar] UBA PF03765 [flax] [poplar] CRAL_TRIO_N CRAL/TRIO, N-terminal domain CL0512 [flax] [poplar] CRAL_TRIO PF00650 [flax] [poplar] CRAL_TRIO CRAL/TRIO domain
Representative CDS sequence Show only first row Show all	>Lus10032587 pacid=23146370 polypeptide=Lus10032587 locus=Lus10032587.g ID=Lus10032587.BGIv1.0 annot-version=v1.0 ATGCCTTTTCTACTTAATGCTTTACATGGATGCTTGCAGAGTATGCACCAGGGATCTCCAACACAAACTCTGACAAAGTTTCTCATAGCAAGGGACTGGG ATATTTCCAAGGCTCATAAAATGTTGGTTGATTGTTTGCGATGGAGGGTACAGAACGAGATTGACAGCATTCTGGCAAAACCAATCGTCCCAACAGAGTT GTATAGATCAGTTCGAGATACTCAGCTGTTAGGATTGTCAGGTTTTACAAAGGAGGGCATTCCGGTTATTTCTGTTGGCGTGGGGCAAAGTACACATGAC AAAGCTTCTATGCATTACTATGTGCAGTCACACATCCAAATGAATGAATATCGCGATCGTGTAGTATTGCCTGACGCAACCAAGAAATATGGAAGGCCCA TCACCACATGTATTAAGATCTTAGATATGACTGGTTTAAAGCTTTCAGCACTGAATCAAATTAAGCTATTAACTGCAATATCTACAATTGATGACCTCAA CTATCCAGAGAAGACAGATACATATTACATTGTCAATGTCCCATACATCTTTTCGGCTTGTTGGAAGGTTGTGAAGCCTTTATTACACGAGAGAACCCGG AACAGAATTCAGATAATGGATGATTCATCGCTGCCTCATTTCTGCCGAAACAAAAGCTCTGGTCCATCTCGTGTTGCTGCAGATGGAACCACCACCACAA ACTGCTTCTCACTGGATCACCCTTTCCATCAGCAACTGTATAGCTACGTTAAACAACAAGCCGACCTTCAAGAAGCCGTTTTGGCTCGAGAACAAGGTTC AGTTCATGTAGGCATCCCCGAGGCTGACCCTGACGAAGCCAAGATAGTGAAGACGATCGAGTCGGAGTTTCATAAGGTAGGGGACTTGAATGGCCTCGAC AAATTGATCAGTCAGTAG
AA sequence Show only first row Show all	>Lus10032587 pacid=23146370 polypeptide=Lus10032587 locus=Lus10032587.g ID=Lus10032587.BGIv1.0 annot-version=v1.0 MPFLLNALHGCLQSMHQGSPTQTLTKFLIARDWDISKAHKMLVDCLRWRVQNEIDSILAKPIVPTELYRSVRDTQLLGLSGFTKEGIPVISVGVGQSTHD KASMHYYVQSHIQMNEYRDRVVLPDATKKYGRPITTCIKILDMTGLKLSALNQIKLLTAISTIDDLNYPEKTDTYYIVNVPYIFSACWKVVKPLLHERTR NRIQIMDDSSLPHFCRNKSSGPSRVAADGTTTTNCFSLDHPFHQQLYSYVKQQADLQEAVLAREQGSVHVGIPEADPDEAKIVKTIESEFHKVGDLNGLD KLISQ

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G55840			Sec14p-like phosphatidylinosit...		Lus10032587 [exp]	0	1
AT1G32540		LOL1	lsd one like 1 (.1.2.3)		Lus10038409 [exp]	6.0	0.8457
AT5G17310		AtUGP2, UGP2	UDP-glucose pyrophosphorylase ...		Lus10020788 [exp]	20.8	0.8527
AT5G22350		ELM1	ELONGATED MITOCHONDRIA 1, Prot...		Lus10005191 [exp]	23.0	0.8276
AT3G24550		ATPERK1	proline-rich extensin-like rec...		Lus10011098 [exp]	24.3	0.8595
AT1G70730		PGM2	phosphoglucomutase 2, Phosphog...		Lus10021777 [exp]	24.5	0.8615
AT4G31990		AAT3, ATAAT1, A...	ASPARTATE AMINOTRANSFERASE DEF...		Lus10001938 [exp]	38.1	0.7979
AT4G26270		PFK3	phosphofructokinase 3 (.1)		Lus10011143 [exp]	40.5	0.8591
AT5G47730			Sec14p-like phosphatidylinosit...		Lus10039106 [exp]	42.0	0.8541
AT3G57810			Cysteine proteinases superfami...		Lus10008986 [exp]	42.7	0.7995
AT1G74920		ALDH10A8	aldehyde dehydrogenase 10A8 (....		Lus10043470 [exp]	55.9	0.8265

Compare expression of checked genes

Lus10032587 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.