Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G07680 302 / 3e-105 emp24/gp25L/p24 family/GOLD family protein (.1) AT3G22845 125 / 2e-35 emp24/gp25L/p24 family/GOLD family protein (.1) AT1G26690 40 / 0.0007 emp24/gp25L/p24 family/GOLD family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10043160 [exp] 397 / 1e-137 AT1G55840 427 / 1e-147 Sec14p-like phosphatidylinositol transfer family protein (.1.2) Lus10016624 [exp] 358 / 2e-127 AT3G07680 320 / 2e-112 emp24/gp25L/p24 family/GOLD family protein (.1) Lus10022525 [exp] 357 / 5e-127 AT3G07680 320 / 1e-112 emp24/gp25L/p24 family/GOLD family protein (.1) Lus10012315 [exp] 248 / 8e-84 AT3G07680 263 / 8e-90 emp24/gp25L/p24 family/GOLD family protein (.1) Lus10006360 [exp] 247 / 2e-83 AT3G07680 268 / 5e-92 emp24/gp25L/p24 family/GOLD family protein (.1) Lus10035821 [exp] 237 / 2e-79 AT3G07680 254 / 1e-86 emp24/gp25L/p24 family/GOLD family protein (.1) Lus10036603 [exp] 234 / 2e-78 AT3G07680 259 / 9e-89 emp24/gp25L/p24 family/GOLD family protein (.1) Lus10041182 [exp] 122 / 3e-34 AT3G22845 350 / 2e-124 emp24/gp25L/p24 family/GOLD family protein (.1) Lus10039381 [exp] 120 / 8e-34 AT3G22845 350 / 1e-124 emp24/gp25L/p24 family/GOLD family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G369000 [exp] 316 / 1e-110 AT3G07680 315 / 2e-110 emp24/gp25L/p24 family/GOLD family protein (.1) Potri.010G081700 [exp] 119 / 2e-33 AT3G22845 366 / 1e-130 emp24/gp25L/p24 family/GOLD family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0521 [flax] [poplar] GOLD-like PF01105 [flax] [poplar] EMP24_GP25L emp24/gp25L/p24 family/GOLD
Representative CDS sequence Show only first row Show all	>Lus10032588 pacid=23146436 polypeptide=Lus10032588 locus=Lus10032588.g ID=Lus10032588.BGIv1.0 annot-version=v1.0 ATGGAAATTTTGGGGATGAGAGGAGTTTTGTTTGTGGTGGTTCTGGTTCTGTTTCTAAGACCCAAAAAAGTGTCTGGGATCAGATTTGTCATTAACAAAG AGGAATGTTTCTCTCATGATGTCAAGTACGATGGAGACACTGTTCATGTTTCCTTTGTCGTCATCAAGGCCGACTCTTCATGGGACCATAGCGACACCGG GGTCGATCTCGTGATAAAAGGACCTACGGGAGAACAAGTGCATGATTTTCGAGACAAAATAAGTGATATGCATGAGTTTGTGGCTCATCAAAAGGGAGTG CACCGATTTTGCTTCTTGAACAAGTCACCCTATCATGAGACAATAGACTTCGATGTCCACGTGTCCCATTTTTCCTACTATGAGGAGCATGCAAAGGATG AGCATTTGGCACCATTAATATACCACATATCAAGGCTGGAGGATGCTCTTTACAACATCCAATTCGAGCAGCATTGGCTCGAGGCACAAACCGAACGCCA GGCTCTCATAAATGATGCAATGGCGAAAAGAGCTATTCAGAAGGCGTTTTTCGAGTCTACAGCACTGATCGGAGCAAGCATTCTTCAAGTTTACCTTCTC CGCCGTCTCTTTGAACGGAAGATGGGCATGTCTAGGGTCTCAGATGGATGGGAGCTTTCCTTGACAGTCAAGACAAATTCATAA
AA sequence Show only first row Show all	>Lus10032588 pacid=23146436 polypeptide=Lus10032588 locus=Lus10032588.g ID=Lus10032588.BGIv1.0 annot-version=v1.0 MEILGMRGVLFVVVLVLFLRPKKVSGIRFVINKEECFSHDVKYDGDTVHVSFVVIKADSSWDHSDTGVDLVIKGPTGEQVHDFRDKISDMHEFVAHQKGV HRFCFLNKSPYHETIDFDVHVSHFSYYEEHAKDEHLAPLIYHISRLEDALYNIQFEQHWLEAQTERQALINDAMAKRAIQKAFFESTALIGASILQVYLL RRLFERKMGMSRVSDGWELSLTVKTNS

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G07680			emp24/gp25L/p24 family/GOLD fa...		Lus10032588 [exp]	0	1
AT2G36190		ATCWINV4	cell wall invertase 4 (.1)		Lus10014217 [exp]	6.2	1.0000
AT5G24070			Peroxidase superfamily protein...		Lus10027049 [exp]	6.6	1.0000
AT5G67360		ARA12	Subtilase family protein (.1)		Lus10027891 [exp]	11.5	1.0000
AT4G35500			Protein kinase superfamily pro...		Lus10016690 [exp]	11.7	1.0000
AT1G26480		GF14IOTA, GRF12	general regulatory factor 12 (...		Lus10036896 [exp]	13.6	1.0000
AT5G14760		AO	L-aspartate oxidase (.1)		Lus10018901 [exp]	13.8	1.0000
AT5G45890		SAG12	senescence-associated gene 12 ...		Lus10020731 [exp]	16.2	1.0000
AT3G16857	GARP	ARR1	response regulator 1 (.1.2)		Lus10039345 [exp]	16.7	1.0000
					Lus10020402 [exp]	19.2	1.0000
					Lus10021815 [exp]	20.2	1.0000

Compare expression of checked genes

Lus10032588 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.