Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G13940 874 / 0 MEE58, EMB1395, SAHH1, HOG1, ATSAHH1 MATERNAL EFFECT EMBRYO ARREST 58, HOMOLOGY-DEPENDENT GENE SILENCING 1, EMBRYO DEFECTIVE 1395, S-ADENOSYL-L-HOMOCYSTEIN HYDROLASE 1, S-adenosyl-L-homocysteine hydrolase (.1.2.3.4) AT3G23810 871 / 0 SAHH2, ATSAHH2 S-adenosyl-l-homocysteine (SAH) hydrolase 2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10043156 [exp] 937 / 0 AT4G13940 907 / 0.0 MATERNAL EFFECT EMBRYO ARREST 58, HOMOLOGY-DEPENDENT GENE SILENCING 1, EMBRYO DEFECTIVE 1395, S-ADENOSYL-L-HOMOCYSTEIN HYDROLASE 1, S-adenosyl-L-homocysteine hydrolase (.1.2.3.4) Lus10016645 [exp] 550 / 0 AT4G13940 576 / 0.0 MATERNAL EFFECT EMBRYO ARREST 58, HOMOLOGY-DEPENDENT GENE SILENCING 1, EMBRYO DEFECTIVE 1395, S-ADENOSYL-L-HOMOCYSTEIN HYDROLASE 1, S-adenosyl-L-homocysteine hydrolase (.1.2.3.4) Lus10022560 [exp] 540 / 0 AT4G13940 564 / 0.0 MATERNAL EFFECT EMBRYO ARREST 58, HOMOLOGY-DEPENDENT GENE SILENCING 1, EMBRYO DEFECTIVE 1395, S-ADENOSYL-L-HOMOCYSTEIN HYDROLASE 1, S-adenosyl-L-homocysteine hydrolase (.1.2.3.4) Lus10022559 [exp] 0 / 1 AT4G13940 188 / 7e-65 MATERNAL EFFECT EMBRYO ARREST 58, HOMOLOGY-DEPENDENT GENE SILENCING 1, EMBRYO DEFECTIVE 1395, S-ADENOSYL-L-HOMOCYSTEIN HYDROLASE 1, S-adenosyl-L-homocysteine hydrolase (.1.2.3.4)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G059400 [exp] 890 / 0 AT4G13940 917 / 0.0 MATERNAL EFFECT EMBRYO ARREST 58, HOMOLOGY-DEPENDENT GENE SILENCING 1, EMBRYO DEFECTIVE 1395, S-ADENOSYL-L-HOMOCYSTEIN HYDROLASE 1, S-adenosyl-L-homocysteine hydrolase (.1.2.3.4) Potri.001G320500 [exp] 886 / 0 AT4G13940 923 / 0.0 MATERNAL EFFECT EMBRYO ARREST 58, HOMOLOGY-DEPENDENT GENE SILENCING 1, EMBRYO DEFECTIVE 1395, S-ADENOSYL-L-HOMOCYSTEIN HYDROLASE 1, S-adenosyl-L-homocysteine hydrolase (.1.2.3.4)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF00670 [flax] [poplar] AdoHcyase_NAD S-adenosyl-L-homocysteine hydrolase, NAD binding domain CL0325 [flax] [poplar] Form_Glyc_dh PF05221 [flax] [poplar] AdoHcyase S-adenosyl-L-homocysteine hydrolase
Representative CDS sequence Show only first row Show all	>Lus10032593 pacid=23146376 polypeptide=Lus10032593 locus=Lus10032593.g ID=Lus10032593.BGIv1.0 annot-version=v1.0 ATGTCCCTCATCGTCGACAAAACCGCCACCGGCCGCGAGTACAAAGTCAAGGACATGTCTCAGGCCGACTTCGGCCGCCTCGAGATCGAGCTCGCGGAGG TCGAAATGCCCGGTCTCATGGCGTCCCGAATCGAGTTCGGACCATCCCAGCCTTTCAAAGGAGCCAGGATCACAGGCTCCCTCCACATGACGATCCAGAC AGCCGTCCTCATCGAAACCCTAACCGCCCTGGGAGCAGAGGTCCGGTGGTGCTCCTGCAACATTTTCAGCACCCAGGATCACGCCGCTGCTGCAATCGCA CGCGATTCCGCCGCCGTGTTCGCCTGGAAGGGGGAGACTCTCCAGGAGTACTGGTGGTGCACCGAGAGGGCTCTCGATTGGGGCCCCGGCGGCGGGCCTG ATATGATCGTCGACGACGGCGGTGACTCCACGCTCTTGATCCACGAGGGCGTCAAGGCTGAGGAGGAGTATGCCAAATCGGGCAAGTTCCCCGATCCCGC TTCCACTGACAATGCTGAATTTCAGATTGTTCTTACCATCATCAGGGACGGATTGAAGGCCGATCCCAAGAAGTACCACAAGATGAAGGACAGATTGGTT GGTGTTTCTGAGGAGACCACCACTGGCGTCAAGAGGCTCTACCAGATGCAAGCCAATGGGACTCTTCTCTTTCCTGCCATTAATTTTGATAACTTGTACG GATGCCGCCACTCCCTTCCCGACGGTCTGATGAGGGCCACTGATGTCATGATCGCCGGCAAGGTCGCACTGGTGTTGGGTTACGGTGATGTGGGAAAGGG ATGCGCTGCAGCCTTGAAGCAAGCCGGAGCCAGAGTCATTGTGACCGAAATCGATCCAATCTGTGCCCTCCAGGCACTAATGGAAGGTCTCCAGGTCCTA ACCCTCGAAGACGTCCTCTCCGAGGTCGACATCTTCGTCACCACCACGGGTAACAAGGACCTGATCATGGTGAACCACATGAGGAAGATGAAGAACAACG CAATTGTATGCAACATCGGCCATTTCGACAACGAAATCGACATGCACGGGCTCGAGACCTTCCCCGGTGTGAAGCGCATCACCATCAAGCCCCAGACGGA CAGGTGGGTGTTCCCAGACACAATGACTGGCATCATTGTGTTGGCGGAGGGGCGTCTGATGAACCTGGGATGTGCCACGGGCCACCCGAGCTTTGTGATG TCGTGCTCGTTCACGAACCAGGTGATTGCGCAGCTGGAGCTGTGGAAGGAGAAGACGAGTGGGAAGTATGAGAAGAAGGTGTATGTTTTGCCTAAGCATC TCGATGAGAAGGTTGCTGCTCTTCACCTCGGGAAGCTTGGAGCTAGGCTTACCAAACTGTCCAAGGATCAAGCTGACTATATCAGCGTCCCTGTTGAGGG CCCGTACAAGCCTGCTCACTACAGGTATTGA
AA sequence Show only first row Show all	>Lus10032593 pacid=23146376 polypeptide=Lus10032593 locus=Lus10032593.g ID=Lus10032593.BGIv1.0 annot-version=v1.0 MSLIVDKTATGREYKVKDMSQADFGRLEIELAEVEMPGLMASRIEFGPSQPFKGARITGSLHMTIQTAVLIETLTALGAEVRWCSCNIFSTQDHAAAAIA RDSAAVFAWKGETLQEYWWCTERALDWGPGGGPDMIVDDGGDSTLLIHEGVKAEEEYAKSGKFPDPASTDNAEFQIVLTIIRDGLKADPKKYHKMKDRLV GVSEETTTGVKRLYQMQANGTLLFPAINFDNLYGCRHSLPDGLMRATDVMIAGKVALVLGYGDVGKGCAAALKQAGARVIVTEIDPICALQALMEGLQVL TLEDVLSEVDIFVTTTGNKDLIMVNHMRKMKNNAIVCNIGHFDNEIDMHGLETFPGVKRITIKPQTDRWVFPDTMTGIIVLAEGRLMNLGCATGHPSFVM SCSFTNQVIAQLELWKEKTSGKYEKKVYVLPKHLDEKVAALHLGKLGARLTKLSKDQADYISVPVEGPYKPAHYRY

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G13940		MEE58, EMB1395,...	MATERNAL EFFECT EMBRYO ARREST ...		Lus10032593 [exp]	0	1
AT2G03200			Eukaryotic aspartyl protease f...		Lus10025702 [exp]	1.0	0.9943
AT5G54160		ATOMT1	O-methyltransferase 1 (.1)		Lus10015576 [exp]	2.0	0.9864
AT2G38080		ATLMCO4, IRX12,...	LACCASE 4, IRREGULAR XYLEM 12,...		Lus10027782 [exp]	2.4	0.9887
AT1G58070			unknown protein		Lus10019953 [exp]	2.4	0.9891
AT1G54790			GDSL-like Lipase/Acylhydrolase...		Lus10029638 [exp]	3.2	0.9835
AT2G03550			alpha/beta-Hydrolases superfam...		Lus10019885 [exp]	3.2	0.9861
AT5G61350			Protein kinase superfamily pro...		Lus10000562 [exp]	3.5	0.9782
AT5G07220		ATBAG3	BCL-2-associated athanogene 3 ...		Lus10023279 [exp]	3.7	0.9852
AT3G62020		GLP10	germin-like protein 10 (.1.2)		Lus10009254 [exp]	4.0	0.9851
AT5G67210		IRX15-L	IRX15-LIKE, Protein of unknown...		Lus10041596 [exp]	4.9	0.9854

Compare expression of checked genes

Lus10032593 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.