Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G55940 282 / 8e-98 EMB2731 embryo defective 2731, Uncharacterised protein family (UPF0172) (.1) AT5G51620 86 / 1e-22 Uncharacterised protein family (UPF0172) (.1), Uncharacterised protein family (UPF0172) (.2), Uncharacterised protein family (UPF0172) (.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10043155 [exp] 339 / 7e-120 AT5G55940 303 / 2e-105 embryo defective 2731, Uncharacterised protein family (UPF0172) (.1) Lus10016647 [exp] 326 / 4e-115 AT5G55940 311 / 2e-109 embryo defective 2731, Uncharacterised protein family (UPF0172) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G370000 [exp] 293 / 4e-102 AT5G55940 282 / 1e-97 embryo defective 2731, Uncharacterised protein family (UPF0172) (.1) Potri.001G370200 [exp] 290 / 9e-101 AT5G55940 283 / 5e-98 embryo defective 2731, Uncharacterised protein family (UPF0172) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0366 [flax] [poplar] JAB PF03665 [flax] [poplar] UPF0172 Uncharacterised protein family (UPF0172)
Representative CDS sequence Show only first row Show all	>Lus10032594 pacid=23146280 polypeptide=Lus10032594 locus=Lus10032594.g ID=Lus10032594.BGIv1.0 annot-version=v1.0 ATGGCTCAGAACGCTTACATCAAGCTCGTTCTCCACTCCCTCAAACACAAGACATCCGCCGTCAACGGCGTCCTGCTCGGCCGTGCTTCTCCTCTCAACG ACAACGTCGTCGAGATCGAAGATTCCGTCCCACTCTTCCACAATCACCTCGGCTTACTCCCTCCCCTCGAGATCTCCCTCATCATGATAGAGGAGTATTA CAGTGCTAGAGGTCTTGGAATTGTTGGGTATTTCCACGCGAATGAGAGGTTTGATGATGTGGAGCTTGGTATTGTGGCCAAGAACATTGCTGATCACATC TATCGCTATTTCCCACAGGCCGCTATTCTTTTGCTAGATAACAAGAAGCTTGAAGCTTTACCGAAGGGGAAACATCGCAGCCCTGTTGTGCAGCTCTATG CAAAGGATGCATACAGGAACTGGAAGGCAACTGGTCCAGATGTAGGCAGCCATTTGATATTTAAGGAGCCAGCTGCTAATACCATCTTACTCGACTACAT TTCCTCAGAGAAGTGGCAAGATGTGGTAGATTTTGACGATCACCTTGACGACATTTCCAAGGATTGGTTGAACCCAGATCTGTTCAAGTAA
AA sequence Show only first row Show all	>Lus10032594 pacid=23146280 polypeptide=Lus10032594 locus=Lus10032594.g ID=Lus10032594.BGIv1.0 annot-version=v1.0 MAQNAYIKLVLHSLKHKTSAVNGVLLGRASPLNDNVVEIEDSVPLFHNHLGLLPPLEISLIMIEEYYSARGLGIVGYFHANERFDDVELGIVAKNIADHI YRYFPQAAILLLDNKKLEALPKGKHRSPVVQLYAKDAYRNWKATGPDVGSHLIFKEPAANTILLDYISSEKWQDVVDFDDHLDDISKDWLNPDLFK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G55940		EMB2731	embryo defective 2731, Unchara...		Lus10032594 [exp]	0	1
AT1G79630			Protein phosphatase 2C family ...		Lus10000402 [exp]	4.9	0.7817
AT4G24820			26S proteasome, regulatory sub...		Lus10017932 [exp]	5.4	0.8033
AT4G24820			26S proteasome, regulatory sub...		Lus10014789 [exp]	6.7	0.7527
AT2G46780			RNA-binding (RRM/RBD/RNP motif...		Lus10002684 [exp]	7.3	0.7833
AT3G10760	GARP		Homeodomain-like superfamily p...		Lus10038996 [exp]	11.0	0.7436
AT1G36050			Endoplasmic reticulum vesicle ...		Lus10036449 [exp]	11.0	0.7581
AT2G46780			RNA-binding (RRM/RBD/RNP motif...		Lus10030202 [exp]	16.1	0.7478
AT5G54250		HLM1, DND2, ATC...	DEFENSE, NO DEATH 2, cyclic nu...		Lus10004509 [exp]	22.5	0.7357
AT1G16750			Protein of unknown function, D...		Lus10039917 [exp]	28.6	0.7471
AT4G17420			Tryptophan RNA-binding attenua...		Lus10007800 [exp]	30.3	0.6981

Compare expression of checked genes

Lus10032594 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.