Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G13224 317 / 1e-106 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) AT5G40490 257 / 2e-82 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) AT1G17640 197 / 9e-60 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) AT4G26650 176 / 4e-51 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) AT5G55550 166 / 3e-47 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2), RNA-binding (RRM/RBD/RNP motifs) family protein (.3), RNA-binding (RRM/RBD/RNP motifs) family protein (.4) AT4G14300 162 / 2e-46 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) AT3G07810 161 / 4e-45 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) AT2G33410 159 / 5e-45 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) AT5G47620 152 / 2e-42 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2), RNA-binding (RRM/RBD/RNP motifs) family protein (.3), RNA-binding (RRM/RBD/RNP motifs) family protein (.4) AT1G58470 133 / 8e-36 XF41, ATRBP1 RNA-binding protein 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10043154 [exp] 422 / 3e-148 AT3G13224 361 / 5e-124 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Lus10032124 [exp] 275 / 2e-89 AT5G40490 307 / 3e-101 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Lus10014562 [exp] 269 / 4e-87 AT5G40490 301 / 9e-99 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Lus10043168 [exp] 177 / 4e-51 AT3G07810 456 / 2e-157 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Lus10032579 [exp] 174 / 5e-50 AT3G07810 447 / 8e-154 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Lus10043124 [exp] 168 / 4e-48 AT2G33410 334 / 2e-111 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Lus10032624 [exp] 165 / 5e-47 AT2G33410 335 / 2e-112 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Lus10006396 [exp] 162 / 9e-47 AT3G07810 351 / 2e-118 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Lus10017555 [exp] 164 / 4e-46 AT3G07810 423 / 7e-144 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G370300 [exp] 365 / 4e-126 AT3G13224 317 / 1e-106 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Potri.001G344900 [exp] 274 / 7e-90 AT5G40490 286 / 1e-93 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Potri.001G196500 [exp] 220 / 2e-68 AT1G17640 274 / 4e-89 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Potri.017G064901 [exp] 210 / 1e-67 AT3G13224 216 / 1e-71 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Potri.003G040900 [exp] 216 / 6e-67 AT1G17640 272 / 3e-88 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Potri.002G258600 [exp] 179 / 1e-52 AT4G14300 277 / 1e-89 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Potri.014G161600 [exp] 172 / 2e-49 AT3G07810 498 / 3e-174 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Potri.014G195300 [exp] 171 / 2e-49 AT4G14300 305 / 2e-100 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Potri.011G088100 [exp] 172 / 3e-49 AT3G07810 428 / 1e-146 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Potri.010G067500 [exp] 171 / 5e-49 AT4G14300 302 / 7e-99 RNA-binding (RRM/RBD/RNP motifs) family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0221 [flax] [poplar] RRM PF00076 [flax] [poplar] RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Representative CDS sequence Show only first row Show all	>Lus10032595 pacid=23146383 polypeptide=Lus10032595 locus=Lus10032595.g ID=Lus10032595.BGIv1.0 annot-version=v1.0 ATGGCTTCCCGGTCCAGGAAGGATAATCCCCACTCCGGCGATGGCGCTAGCCCAGGGAAGATTTTTATTGGAGGATTAGCCAAAGGTACCAGCTACGAAA CTTTCAACAAACACTTTGGGAAGTATGGGGAGATAACTGACTCTGTCATCATGAAAGATCGTCACACTGGTCAGCCTAGAGGTTTTGGATTCATTACTTA TGCTGATCCTTCAGTTGTTGACAAGGTCATAGAAGACCCACATATCATCAACGAAAAGCAGGTTGAGATAAAGAGGACCATTCCTAAAGGATCTGCGCAT ACTAAAGATTTCAAAACCAAGAAAATATTTGTTGGCGGGATTCCATCATCTGTTACAGAAGATGACTTCCAAGAGTTCTTTTCAAGGTACGGGAAAGTTT TGGAGCATCAAATTATAGTGGATCATGAAACCCAACGTCCTCGAGGCTTTGGATTTATCATTTTTGACAGTGAAGAAATAGTAGATGAACTGTTGTCGAA CGGAAACATGATTGATATGGCTGGTACTCAGGTGGAGATCAAGAAAGCTGAACCCAGGAAAACCTCAAACCCACCTCCTGCTCCTGCTCCTGCGTATGGT ACCAACTCCCGAGGTCGTTCATTCAATGATGACTTTGGTGGTGGATATGGCAGTCCATATGGGAGTTTTGATGGAGGGTTTGGCCCCGGTCCTTACAGAA CACCTGGGGGTATGGGTAGTAGGCTTGGTGGTGGGTATGGGTATGGTAGTGGAGGTCCAGAATATGGAGGTGGTTATGGGAGCTTCGGAGGTAGTAGCCT TGGAGGTGGTTATAGAGGTGAACCCCCACTGGGTTATTCAGGTCGATTCGGACCTTATGGCTCCGGCTATAGTGGAGGTTATGGTGGTAGTGGTTTAGGA GGATATGGTCGAGGAGGCGATGGATATGGCAGTTACGGAGGTCCAGGTGCAGGTTATGGCGATGGTTATGAATCTGGTCCTGGAACTAGTTTCGGAGGAC CGGGGGGTGGTCTATATGGCCGTTCAGGAGGTTATAGTGGCAGTAGTAGGTACCATCCTTACTCAAGGTAG
AA sequence Show only first row Show all	>Lus10032595 pacid=23146383 polypeptide=Lus10032595 locus=Lus10032595.g ID=Lus10032595.BGIv1.0 annot-version=v1.0 MASRSRKDNPHSGDGASPGKIFIGGLAKGTSYETFNKHFGKYGEITDSVIMKDRHTGQPRGFGFITYADPSVVDKVIEDPHIINEKQVEIKRTIPKGSAH TKDFKTKKIFVGGIPSSVTEDDFQEFFSRYGKVLEHQIIVDHETQRPRGFGFIIFDSEEIVDELLSNGNMIDMAGTQVEIKKAEPRKTSNPPPAPAPAYG TNSRGRSFNDDFGGGYGSPYGSFDGGFGPGPYRTPGGMGSRLGGGYGYGSGGPEYGGGYGSFGGSSLGGGYRGEPPLGYSGRFGPYGSGYSGGYGGSGLG GYGRGGDGYGSYGGPGAGYGDGYESGPGTSFGGPGGGLYGRSGGYSGSSRYHPYSR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G13224			RNA-binding (RRM/RBD/RNP motif...		Lus10032595 [exp]	0	1
AT5G51410			LUC7 N_terminus domain-contain...		Lus10038924 [exp]	1.0	0.8047
AT2G20330			Transducin/WD40 repeat-like su...		Lus10022855 [exp]	3.5	0.7783
AT4G12680			unknown protein		Lus10016056 [exp]	4.2	0.7243
AT1G18260		HRD3A, EBS5	EMS-mutagenized bri1 suppresso...		Lus10009046 [exp]	5.5	0.7827
AT5G14170		CHC1	SWIB/MDM2 domain superfamily p...		Lus10035214 [exp]	6.0	0.7823
AT2G23060			Acyl-CoA N-acyltransferases (N...		Lus10002468 [exp]	6.2	0.7410
AT4G10925			Nuclear transport factor 2 (NT...		Lus10023064 [exp]	8.5	0.7696
AT3G48190		PIG1, ATATM, AT...	pcd in male gametogenesis 1, A...		Lus10002382 [exp]	8.9	0.7673
AT1G01500			Erythronate-4-phosphate dehydr...		Lus10005124 [exp]	8.9	0.7313
AT3G26560			ATP-dependent RNA helicase, pu...		Lus10036783 [exp]	9.2	0.7359

Compare expression of checked genes

Lus10032595 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.