Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G04160 232 / 6e-71 XI-B, XI-8, ATXIB, XIB MYOSIN XI-8, ARABIDOPSIS THALIANA MYOSIN XI B, myosin XI B (.1) AT4G28710 231 / 2e-70 ATXIH, XIH MYOSIN XI H, Myosin family protein with Dil domain (.1) AT5G43900 212 / 8e-64 XI-6, XI-2, ATMYA2, MYA2 MYOSIN XI-6, MYOSIN X1 2, ARABIDOPSIS MYOSIN 2, myosin 2 (.1.2.3) AT5G20490 211 / 2e-63 XI-17, ATXIK, XIK MYOSIN XI-17, MYOSIN XI K, Myosin family protein with Dil domain (.1.2) AT1G54560 209 / 8e-63 PCR1, ATXIE, XIE MYOSIN XI E, Myosin family protein with Dil domain (.1) AT1G08730 209 / 1e-62 PCR43, ATXIC, XIC MYOSIN XI C, Myosin family protein with Dil domain (.1) AT1G17580 204 / 4e-61 XI-1, ATMYA1, MYA1 MYOSIN XI 1, ARABIDOPSIS MYOSIN 1, myosin 1 (.1) AT2G33240 189 / 7e-56 ATXID, XID myosin XI D (.1) AT2G20290 186 / 1e-54 ATXIG, XIG MYOSIN XI G, myosin-like protein XIG (.1) AT4G33200 177 / 7e-52 XI-15, ATXI-I, XI-I MYOSIN XI-15, MYOSIN XI I, myosin, putative (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10043153 [exp] 330 / 3e-105 AT5G43900 1250 / 0.0 MYOSIN XI-6, MYOSIN X1 2, ARABIDOPSIS MYOSIN 2, myosin 2 (.1.2.3) Lus10023696 [exp] 259 / 2e-80 AT5G43900 1841 / 0.0 MYOSIN XI-6, MYOSIN X1 2, ARABIDOPSIS MYOSIN 2, myosin 2 (.1.2.3) Lus10011919 [exp] 247 / 1e-78 AT5G43900 978 / 0.0 MYOSIN XI-6, MYOSIN X1 2, ARABIDOPSIS MYOSIN 2, myosin 2 (.1.2.3) Lus10022850 [exp] 245 / 3e-75 AT5G43900 2380 / 0.0 MYOSIN XI-6, MYOSIN X1 2, ARABIDOPSIS MYOSIN 2, myosin 2 (.1.2.3) Lus10005521 [exp] 212 / 7e-64 AT1G54560 2686 / 0.0 MYOSIN XI E, Myosin family protein with Dil domain (.1) Lus10021570 [exp] 208 / 2e-62 AT5G20490 2587 / 0.0 MYOSIN XI-17, MYOSIN XI K, Myosin family protein with Dil domain (.1.2) Lus10017160 [exp] 208 / 2e-62 AT5G20490 2476 / 0.0 MYOSIN XI-17, MYOSIN XI K, Myosin family protein with Dil domain (.1.2) Lus10003315 [exp] 204 / 5e-61 AT5G20490 2479 / 0.0 MYOSIN XI-17, MYOSIN XI K, Myosin family protein with Dil domain (.1.2) Lus10038072 [exp] 168 / 2e-48 AT4G33200 1982 / 0.0 MYOSIN XI-15, MYOSIN XI I, myosin, putative (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G254300 [exp] 249 / 7e-77 AT1G04160 2412 / 0.0 MYOSIN XI-8, ARABIDOPSIS THALIANA MYOSIN XI B, myosin XI B (.1) Potri.008G174500 [exp] 244 / 4e-75 AT5G43900 2206 / 0.0 MYOSIN XI-6, MYOSIN X1 2, ARABIDOPSIS MYOSIN 2, myosin 2 (.1.2.3) Potri.001G199200 [exp] 215 / 8e-65 AT5G20490 2448 / 0.0 MYOSIN XI-17, MYOSIN XI K, Myosin family protein with Dil domain (.1.2) Potri.006G145700 [exp] 213 / 2e-64 AT5G20490 2580 / 0.0 MYOSIN XI-17, MYOSIN XI K, Myosin family protein with Dil domain (.1.2) Potri.013G043900 [exp] 212 / 9e-64 AT1G54560 2512 / 0.0 MYOSIN XI E, Myosin family protein with Dil domain (.1) Potri.019G013800 [exp] 209 / 6e-63 AT1G54560 2616 / 0.0 MYOSIN XI E, Myosin family protein with Dil domain (.1) Potri.001G233100 [exp] 187 / 3e-55 AT2G31900 2385 / 0.0 MYOSIN XI F, MYOSIN 5, myosin-like protein XIF (.1) Potri.009G025300 [exp] 181 / 6e-53 AT2G31900 2363 / 0.0 MYOSIN XI F, MYOSIN 5, myosin-like protein XIF (.1) Potri.006G220000 [exp] 167 / 5e-48 AT4G33200 2352 / 0.0 MYOSIN XI-15, MYOSIN XI I, myosin, putative (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01843 [flax] [poplar] DIL DIL domain
Representative CDS sequence Show only first row Show all	>Lus10032596 pacid=23146290 polypeptide=Lus10032596 locus=Lus10032596.g ID=Lus10032596.BGIv1.0 annot-version=v1.0 ATGCACCGTGTGAGTAATCTGCTCTCTGATGGAAGTAGTGCCCTCCTGCTCCTGCGTCGTGAGTGTTGCACGTTCAGAAATGGAGAATTCGTTAAATCTG GCTTAGCTGAACTAGAGACATGGTGTGGTCAAGCAAAAGAAGAGTTTATAGGATCAGCTTGGGATGAACTAAAACACACAAGGCAAGCAGTTGGATTCCT GGTGATACACCAAAAATCCAGGATTTCTTACGATGATATCGTGAATGATCTTTGCCCGATATTGAGCGTTCAACAACTTTACAGAGTGTGTACGTTGTAC TGGGATGACAACTACAATACTCGAAGCGTGTCCCCAGACGTAATATCCAGCATGAAAACTTTGGTAACAGACGATTCCAGCAACGATCACTCCTTTCTGT TGGAGGATAGTTCAAGGCTCCCATTCACAGTGGAAGAGTTATGTAATTCATTCCAAGACAAGGACTTCTCCGAAGTGAAGCCTCCCGACGAGATTGCCGA CAACTCCGACTTCCAATTCTTGATCGCCGAATAA
AA sequence Show only first row Show all	>Lus10032596 pacid=23146290 polypeptide=Lus10032596 locus=Lus10032596.g ID=Lus10032596.BGIv1.0 annot-version=v1.0 MHRVSNLLSDGSSALLLLRRECCTFRNGEFVKSGLAELETWCGQAKEEFIGSAWDELKHTRQAVGFLVIHQKSRISYDDIVNDLCPILSVQQLYRVCTLY WDDNYNTRSVSPDVISSMKTLVTDDSSNDHSFLLEDSSRLPFTVEELCNSFQDKDFSEVKPPDEIADNSDFQFLIAE

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G04160		XI-B, XI-8, ATX...	MYOSIN XI-8, ARABIDOPSIS THALI...		Lus10032596 [exp]	0	1
AT1G53200			unknown protein		Lus10011648 [exp]	1.4	0.8281
AT1G69480			EXS (ERD1/XPR1/SYG1) family pr...		Lus10019230 [exp]	4.5	0.7688
AT5G01660			unknown protein		Lus10002863 [exp]	6.5	0.7739
AT2G34930			disease resistance family prot...		Lus10033931 [exp]	10.5	0.7666
AT4G20990		ATACA4, ACA4	A. THALIANA ALPHA CARBONIC ANH...		Lus10031027 [exp]	12.0	0.7653
AT3G24130			Pectin lyase-like superfamily ...		Lus10007136 [exp]	12.2	0.6739
					Lus10016386 [exp]	13.0	0.6505
AT2G34790		MEE23, EDA28	MATERNAL EFFECT EMBRYO ARREST ...		Lus10023363 [exp]	16.7	0.7417
AT4G20990		ATACA4, ACA4	A. THALIANA ALPHA CARBONIC ANH...		Lus10018017 [exp]	16.7	0.7802
AT1G59970			Matrixin family protein (.1)		Lus10041294 [exp]	22.8	0.6475

Compare expression of checked genes

Lus10032596 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.