Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G13450 174 / 1e-54 Adenine nucleotide alpha hydrolases-like superfamily protein (.1.2) AT2G03720 73 / 6e-16 MRH6 morphogenesis of root hair 6, Adenine nucleotide alpha hydrolases-like superfamily protein (.1) AT1G69080 65 / 1e-12 Adenine nucleotide alpha hydrolases-like superfamily protein (.1.2) AT5G17390 64 / 3e-12 Adenine nucleotide alpha hydrolases-like superfamily protein (.1) AT3G03290 63 / 1e-11 Adenine nucleotide alpha hydrolases-like superfamily protein (.1) AT1G44760 58 / 3e-10 Adenine nucleotide alpha hydrolases-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10043152 [exp] 361 / 6e-128 AT4G13450 178 / 4e-56 Adenine nucleotide alpha hydrolases-like superfamily protein (.1.2) Lus10014459 [exp] 328 / 4e-115 AT4G13450 195 / 8e-63 Adenine nucleotide alpha hydrolases-like superfamily protein (.1.2) Lus10023716 [exp] 225 / 4e-76 AT4G13450 136 / 2e-41 Adenine nucleotide alpha hydrolases-like superfamily protein (.1.2) Lus10034661 [exp] 63 / 7e-12 AT5G17390 160 / 3e-48 Adenine nucleotide alpha hydrolases-like superfamily protein (.1) Lus10019173 [exp] 58 / 5e-10 AT1G69080 192 / 2e-61 Adenine nucleotide alpha hydrolases-like superfamily protein (.1.2) Lus10036814 [exp] 51 / 1e-08 AT1G69080 109 / 7e-32 Adenine nucleotide alpha hydrolases-like superfamily protein (.1.2) Lus10007982 [exp] 54 / 2e-08 AT5G17390 149 / 1e-43 Adenine nucleotide alpha hydrolases-like superfamily protein (.1) Lus10029664 [exp] 52 / 4e-08 AT1G44760 236 / 2e-79 Adenine nucleotide alpha hydrolases-like superfamily protein (.1) Lus10042701 [exp] 52 / 5e-08 AT1G44760 235 / 6e-79 Adenine nucleotide alpha hydrolases-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G064800 [exp] 204 / 9e-67 AT4G13450 194 / 4e-63 Adenine nucleotide alpha hydrolases-like superfamily protein (.1.2) Potri.008G109000 [exp] 82 / 6e-19 AT1G69080 196 / 6e-63 Adenine nucleotide alpha hydrolases-like superfamily protein (.1.2) Potri.T170801 [exp] 81 / 2e-18 AT1G69080 196 / 3e-63 Adenine nucleotide alpha hydrolases-like superfamily protein (.1.2) Potri.010G140200 [exp] 76 / 2e-16 AT1G69080 202 / 3e-65 Adenine nucleotide alpha hydrolases-like superfamily protein (.1.2) Potri.015G060700 [exp] 59 / 2e-10 AT3G03290 198 / 2e-63 Adenine nucleotide alpha hydrolases-like superfamily protein (.1) Potri.002G084600 [exp] 55 / 6e-09 AT1G44760 200 / 5e-65 Adenine nucleotide alpha hydrolases-like superfamily protein (.1) Potri.005G177100 [exp] 53 / 2e-08 AT1G44760 226 / 3e-75 Adenine nucleotide alpha hydrolases-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0039 [flax] [poplar] HUP PF00582 [flax] [poplar] Usp Universal stress protein family
Representative CDS sequence Show only first row Show all	>Lus10032598 pacid=23146372 polypeptide=Lus10032598 locus=Lus10032598.g ID=Lus10032598.BGIv1.0 annot-version=v1.0 ATGGGGTCGTTGCCGATGAAGAAAGTAATGGTGGTGGTGGATCCAAGCAGGGAGGCCGCCGGAGCGCTCCAATATGCATTGTCCCACGTCGTAACTGAGA AAGACGAGCTTATCCTGGTTCACGTCGAAACACAAAATTCATGGAAGAACACCCTCACTTTCTCTTTTCTTCGTCGATCCGGCATCTCGATTCCGGCCAT TAACAATAATAATAATAATAATAATAATCATCCATGTTCGACATCATCATCGGCGACGGAAGGAGGAGTCGGAGGGGGTGGTGGAGGAATGAACGGCGGA GGAGGAGGAGGAGGAGAAGAGGAGGTTGATTTTTTGGAAGCGATGAAGCAGTTATGCGAGGCGGCAAAGCCAAGGCTGAAAGTGAAGGTGGAGAGGCTAC AAATGGGAGCGAGGGACAAAGCTAGCGTCATTCTGTTCAAGAGCACTTCCATGGCGGTCGATCATCTCATCATTGGCCAAAAGAAGAACCTCTCCAGCAT CTTACTAGGGACCACCAAATACAAAAAACCAGGAGGAATGGGGCCAAAGTCACTGGACATGGCAGAGTATTTGATCGAGTACAGCAAGTGCAATTGTATT GGGGTGCAGAAGAAGGGGCAAAGTGGAGGTTATCTTCTCAACACTAAGACCCAGAAGAATTTTTGGCTCCTTGCTTAG
AA sequence Show only first row Show all	>Lus10032598 pacid=23146372 polypeptide=Lus10032598 locus=Lus10032598.g ID=Lus10032598.BGIv1.0 annot-version=v1.0 MGSLPMKKVMVVVDPSREAAGALQYALSHVVTEKDELILVHVETQNSWKNTLTFSFLRRSGISIPAINNNNNNNNNHPCSTSSSATEGGVGGGGGGMNGG GGGGGEEEVDFLEAMKQLCEAAKPRLKVKVERLQMGARDKASVILFKSTSMAVDHLIIGQKKNLSSILLGTTKYKKPGGMGPKSLDMAEYLIEYSKCNCI GVQKKGQSGGYLLNTKTQKNFWLLA

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G13450			Adenine nucleotide alpha hydro...		Lus10032598 [exp]	0	1
AT4G25950		VATG3	vacuolar ATP synthase G3 (.1)		Lus10001543 [exp]	7.1	0.8678
AT1G63460		ATGPX8	glutathione peroxidase 8 (.1)		Lus10008534 [exp]	13.7	0.8703
					Lus10029087 [exp]	29.2	0.8159
AT5G67360		ARA12	Subtilase family protein (.1)		Lus10008921 [exp]	31.3	0.8522
AT4G22860			Cell cycle regulated microtubu...		Lus10031690 [exp]	35.7	0.8428
AT1G07850			Protein of unknown function (D...		Lus10036142 [exp]	36.0	0.7429
AT3G19620			Glycosyl hydrolase family prot...		Lus10002128 [exp]	44.4	0.8370
AT1G02050		LAP6	LESS ADHESIVE POLLEN 6, Chalco...		Lus10039904 [exp]	50.8	0.8326
AT5G41460			Protein of unknown function (D...		Lus10018123 [exp]	51.9	0.8365
AT3G01650		RGLG1	RING domain ligase1 (.1)		Lus10015079 [exp]	56.7	0.8283

Compare expression of checked genes

Lus10032598 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.