Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G13600 158 / 1e-48 Carbohydrate-binding X8 domain superfamily protein (.1) AT1G18650 110 / 8e-31 PDCB3 plasmodesmata callose-binding protein 3 (.1) AT2G30933 102 / 3e-27 Carbohydrate-binding X8 domain superfamily protein (.1.2) AT5G61130 100 / 1e-26 PDCB1 plasmodesmata callose-binding protein 1 (.1) AT2G05790 104 / 3e-26 O-Glycosyl hydrolases family 17 protein (.1) AT1G11820 103 / 7e-26 O-Glycosyl hydrolases family 17 protein (.1.2) AT2G16230 102 / 1e-25 O-Glycosyl hydrolases family 17 protein (.1) AT5G24318 101 / 3e-25 O-Glycosyl hydrolases family 17 protein (.1.2) AT4G26830 100 / 4e-25 O-Glycosyl hydrolases family 17 protein (.1) AT5G55180 100 / 5e-25 O-Glycosyl hydrolases family 17 protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10021619 [exp] 114 / 3e-31 AT1G18650 151 / 1e-45 plasmodesmata callose-binding protein 3 (.1) Lus10021157 [exp] 111 / 1e-30 AT1G18650 157 / 7e-49 plasmodesmata callose-binding protein 3 (.1) Lus10040522 [exp] 111 / 1e-30 AT1G18650 158 / 7e-49 plasmodesmata callose-binding protein 3 (.1) Lus10034690 [exp] 112 / 2e-30 AT1G18650 157 / 8e-48 plasmodesmata callose-binding protein 3 (.1) Lus10037071 [exp] 106 / 1e-28 AT1G18650 138 / 3e-41 plasmodesmata callose-binding protein 3 (.1) Lus10036914 [exp] 105 / 2e-28 AT1G18650 139 / 2e-41 plasmodesmata callose-binding protein 3 (.1) Lus10007342 [exp] 105 / 9e-28 AT2G30933 167 / 4e-51 Carbohydrate-binding X8 domain superfamily protein (.1.2) Lus10020765 [exp] 103 / 4e-27 AT2G30933 169 / 4e-52 Carbohydrate-binding X8 domain superfamily protein (.1.2) Lus10018306 [exp] 106 / 6e-27 AT5G55180 632 / 0.0 O-Glycosyl hydrolases family 17 protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G055700 [exp] 176 / 3e-56 AT4G13600 152 / 3e-46 Carbohydrate-binding X8 domain superfamily protein (.1) Potri.001G315700 [exp] 173 / 6e-55 AT4G13600 155 / 2e-47 Carbohydrate-binding X8 domain superfamily protein (.1) Potri.015G057800 [exp] 116 / 1e-32 AT1G18650 151 / 3e-46 plasmodesmata callose-binding protein 3 (.1) Potri.012G065750 [exp] 115 / 3e-32 AT1G18650 142 / 1e-42 plasmodesmata callose-binding protein 3 (.1) Potri.011G094400 [exp] 110 / 2e-28 AT5G55180 635 / 0.0 O-Glycosyl hydrolases family 17 protein (.1.2) Potri.013G003500 [exp] 108 / 1e-27 AT1G09460 144 / 3e-38 Carbohydrate-binding X8 domain superfamily protein (.1) Potri.005G003500 [exp] 108 / 1e-27 AT2G30933 142 / 1e-38 Carbohydrate-binding X8 domain superfamily protein (.1.2) Potri.002G059600 [exp] 103 / 3e-27 AT2G30933 164 / 5e-50 Carbohydrate-binding X8 domain superfamily protein (.1.2) Potri.004G153800 [exp] 104 / 2e-26 AT4G34480 649 / 0.0 O-Glycosyl hydrolases family 17 protein (.1) Potri.007G111000 [exp] 99 / 3e-26 AT4G05430 148 / 5e-46 Carbohydrate-binding X8 domain superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF07983 [flax] [poplar] X8 X8 domain
Representative CDS sequence Show only first row Show all	>Lus10032601 pacid=23146439 polypeptide=Lus10032601 locus=Lus10032601.g ID=Lus10032601.BGIv1.0 annot-version=v1.0 ATGGCAGCATTGCCGTCTCTGCAATCTGCAGTATTGCTGATAATATTGTTGGTCAGGCTGCAGCTGGGAACCGTGGAGGCGACGTGGTGCGTGGCGAGGA GCGACGCCAGCACCCAGGCTCTGCAGACGGCTCTGGACTACGCATGCTGGGCAGGAGCGGACTGCACTCCGATCCAGTCAAACGGACTCTGTTTCCTACC CAACACGATACAGGCTCATGCTTCGTACGCGTTCAACAGCTACTTCCAGCGGAAGTCCATGGCCCCTGGCTCCTGCGACTTCTCCGGCACTGCTAACATC GCCCGCACCGACCCCAGTTATGGTTCCTGCGTTTACCCCGGCTCCCTCAGCACGGCAGGAGGAGGGATCACGACTCCAACCACAACTCCAACAACTGCAG ACATTCCCAACACTTGGACACCTCCGGGGACTATTCCGACAACCACGGGACTTACTCCGCCCATCTCTACCGACGAGGATGACTCCAGAGCTTCCATATT TTCCACTGCCATAAACGTTGTAGCTCCTGTTGGCTGTGTGCTCATGATTCTTTTATTTTTAGAGTAA
AA sequence Show only first row Show all	>Lus10032601 pacid=23146439 polypeptide=Lus10032601 locus=Lus10032601.g ID=Lus10032601.BGIv1.0 annot-version=v1.0 MAALPSLQSAVLLIILLVRLQLGTVEATWCVARSDASTQALQTALDYACWAGADCTPIQSNGLCFLPNTIQAHASYAFNSYFQRKSMAPGSCDFSGTANI ARTDPSYGSCVYPGSLSTAGGGITTPTTTPTTADIPNTWTPPGTIPTTTGLTPPISTDEDDSRASIFSTAINVVAPVGCVLMILLFLE

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G13600			Carbohydrate-binding X8 domain...		Lus10032601 [exp]	0	1
AT5G39420		CDC2CAT	CDC2C (.1)		Lus10005228 [exp]	2.6	0.9207
AT1G67720			Leucine-rich repeat protein ki...		Lus10037051 [exp]	3.5	0.9127
AT3G15680			Ran BP2/NZF zinc finger-like s...		Lus10002032 [exp]	4.6	0.8907
AT5G50150			Protein of Unknown Function (D...		Lus10042092 [exp]	4.9	0.8882
AT2G35150		EXL7, EXL1	EXORDIUM LIKE 7, EXORDIUM like...		Lus10017139 [exp]	5.9	0.8798
AT1G43850		SEU	SEUSS transcriptional co-regul...		Lus10029594 [exp]	6.3	0.8626
AT1G11915			unknown protein		Lus10023362 [exp]	8.1	0.8800
AT5G62890			Xanthine/uracil permease famil...		Lus10010707 [exp]	8.1	0.8843
AT5G12080		ATMSL10, MSL10	mechanosensitive channel of sm...		Lus10019694 [exp]	8.9	0.8667
AT5G65700		BAM1	BARELY ANY MERISTEM 1, Leucine...		Lus10011585 [exp]	10.4	0.8778

Compare expression of checked genes

Lus10032601 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.