Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G15810 180 / 7e-57 Protein of unknown function (DUF567) (.1) AT1G80120 161 / 9e-50 Protein of unknown function (DUF567) (.1) AT2G38640 66 / 3e-13 Protein of unknown function (DUF567) (.1) AT3G11740 61 / 2e-11 Protein of unknown function (DUF567) (.1) AT5G01750 60 / 1e-10 Protein of unknown function (DUF567) (.1), Protein of unknown function (DUF567) (.2) AT3G14260 59 / 3e-10 Protein of unknown function (DUF567) (.1) AT5G41590 58 / 3e-10 Protein of unknown function (DUF567) (.1) AT1G53870 58 / 4e-10 Protein of unknown function (DUF567) (.1), Protein of unknown function (DUF567) (.2) AT1G53890 58 / 4e-10 Protein of unknown function (DUF567) (.1), Protein of unknown function (DUF567) (.2), Protein of unknown function (DUF567) (.3) AT2G14560 56 / 3e-09 LURP1 LATE UPREGULATED IN RESPONSE TO HYALOPERONOSPORA PARASITICA, Protein of unknown function (DUF567) (.1), Protein of unknown function (DUF567) (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016666 [exp] 230 / 3e-76 AT3G15810 265 / 5e-90 Protein of unknown function (DUF567) (.1) Lus10007118 [exp] 140 / 5e-42 AT3G15810 191 / 4e-62 Protein of unknown function (DUF567) (.1) Lus10038097 [exp] 139 / 1e-40 AT3G15810 216 / 8e-71 Protein of unknown function (DUF567) (.1) Lus10007423 [exp] 70 / 1e-14 AT2G38640 187 / 4e-60 Protein of unknown function (DUF567) (.1) Lus10006656 [exp] 69 / 2e-14 AT3G15810 127 / 7e-37 Protein of unknown function (DUF567) (.1) Lus10014154 [exp] 63 / 5e-12 AT5G01750 206 / 2e-67 Protein of unknown function (DUF567) (.1), Protein of unknown function (DUF567) (.2) Lus10022754 [exp] 62 / 2e-11 AT5G01750 214 / 3e-70 Protein of unknown function (DUF567) (.1), Protein of unknown function (DUF567) (.2) Lus10010681 [exp] 62 / 2e-11 AT2G38640 184 / 6e-59 Protein of unknown function (DUF567) (.1) Lus10014021 [exp] 52 / 7e-08 AT5G01750 202 / 6e-66 Protein of unknown function (DUF567) (.1), Protein of unknown function (DUF567) (.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G192000 [exp] 204 / 8e-67 AT3G15810 281 / 5e-97 Protein of unknown function (DUF567) (.1) Potri.003G032500 [exp] 199 / 1e-64 AT3G15810 264 / 2e-90 Protein of unknown function (DUF567) (.1) Potri.006G067000 [exp] 151 / 8e-46 AT3G15810 229 / 1e-76 Protein of unknown function (DUF567) (.1) Potri.006G113400 [exp] 82 / 5e-19 AT2G38640 214 / 5e-71 Protein of unknown function (DUF567) (.1) Potri.006G140900 [exp] 80 / 4e-18 AT2G05910 245 / 8e-83 Protein of unknown function (DUF567) (.1) Potri.016G143000 [exp] 76 / 1e-16 AT2G38640 214 / 1e-70 Protein of unknown function (DUF567) (.1) Potri.003G072200 [exp] 66 / 3e-13 AT3G14260 173 / 2e-54 Protein of unknown function (DUF567) (.1) Potri.016G143500 [exp] 66 / 5e-13 AT1G80120 105 / 7e-28 Protein of unknown function (DUF567) (.1) Potri.001G098400 [exp] 66 / 5e-13 AT5G41590 201 / 3e-65 Protein of unknown function (DUF567) (.1) Potri.006G113800 [exp] 65 / 1e-12 AT1G80120 112 / 3e-30 Protein of unknown function (DUF567) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0395 [flax] [poplar] Tubby_C PF04525 [flax] [poplar] LOR LURP-one-related
Representative CDS sequence Show only first row Show all	>Lus10032602 pacid=23146273 polypeptide=Lus10032602 locus=Lus10032602.g ID=Lus10032602.BGIv1.0 annot-version=v1.0 ATGAAGGAAAGCAGGAGCGGGGGATTGGTGGTTGCGGACGGACTGTACGTGTACGAGAAAGAGAAACTGTTCACAGTTTTCAAAACCTCCATGTTCTTCG CCAACGACGGCTTCAACGTCCACGATTCTAGCAACGGCCACTTGGTCTTCCGGGTCGACTCGTACGGACCCGATGCTAGCGACAGGGGCGAACTCGTCCT CATGGACGCCCAAGGCCACTGCTTGCTCACCGTCCGCAAGAAGAGGCGGAGTATGCATCAGCGGTGGGAAGGGTACACAGGGGACAGGGCGGAAGGGCAG AAGGCGGTATTCAGCGTGAGCAGATCTTCGATGATCGGACGGCCAGGAGTGAGCGTGGAGTTGTACGAGAACAGCAGCCGGAGGGAGGAAGAGTACGAGA TCGAAGGTAGCTACGGGAGCCGGAGTTGCACGGTGATGGACTCGACCAGGAAAGTGGCGGGGGGGGGGGGGGGGAGGGGGGGCAGGAAAGTGGATGCGTC GACGAGCGTGGTGCTAGGGAAGGACGCCTTCTCGCTGGCTCTCAAGCCTGGATTCGACGCCGCCTTCACAATGGGAATGGTTCTGGTTCTGGATCACATC TGCGGCGGTAATAATGATCTTGTTGTCGTTGATGATGATGGTAAAGCTGGTGATGATGTTGAACTGATCAACCAGGGTTAA
AA sequence Show only first row Show all	>Lus10032602 pacid=23146273 polypeptide=Lus10032602 locus=Lus10032602.g ID=Lus10032602.BGIv1.0 annot-version=v1.0 MKESRSGGLVVADGLYVYEKEKLFTVFKTSMFFANDGFNVHDSSNGHLVFRVDSYGPDASDRGELVLMDAQGHCLLTVRKKRRSMHQRWEGYTGDRAEGQ KAVFSVSRSSMIGRPGVSVELYENSSRREEEYEIEGSYGSRSCTVMDSTRKVAGGGGGRGGRKVDASTSVVLGKDAFSLALKPGFDAAFTMGMVLVLDHI CGGNNDLVVVDDDGKAGDDVELINQG

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G15810			Protein of unknown function (D...		Lus10032602 [exp]	0	1
AT1G64940		CYP89A6	"cytochrome P450, family 87, s...		Lus10020353 [exp]	1.4	0.9150
AT3G43660			Vacuolar iron transporter (VIT...		Lus10025685 [exp]	2.0	0.9271
AT3G48280		CYP71A25	"cytochrome P450, family 71, s...		Lus10017961 [exp]	3.2	0.9071
AT4G05200		CRK25	cysteine-rich RLK (RECEPTOR-li...		Lus10012655 [exp]	3.2	0.8895
AT4G29110			unknown protein		Lus10014153 [exp]	3.5	0.9054
AT1G03495			HXXXD-type acyl-transferase fa...		Lus10031587 [exp]	4.0	0.8948
AT3G53180		NodGS	nodulin/glutamine synthase-lik...		Lus10014407 [exp]	4.2	0.9127
AT1G48590			Calcium-dependent lipid-bindin...		Lus10003710 [exp]	4.5	0.9097
AT1G61600			Protein of unknown function (D...		Lus10035379 [exp]	6.5	0.9010
AT5G49120			Protein of unknown function (D...		Lus10006499 [exp]	6.8	0.8652

Compare expression of checked genes

Lus10032602 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.