Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G04910 843 / 0 O-fucosyltransferase family protein (.1) AT1G22460 281 / 3e-88 O-fucosyltransferase family protein (.1) AT5G15740 274 / 4e-86 RRT1 O-fucosyltransferase family protein (.1) AT1G14020 273 / 1e-85 O-fucosyltransferase family protein (.1) AT4G24530 269 / 8e-84 O-fucosyltransferase family protein (.1) AT2G37980 271 / 1e-83 O-fucosyltransferase family protein (.1) AT2G03280 267 / 1e-83 O-fucosyltransferase family protein (.1.2) AT5G35570 271 / 2e-83 O-fucosyltransferase family protein (.1) AT3G02250 266 / 7e-83 O-fucosyltransferase family protein (.1) AT3G54100 267 / 6e-82 O-fucosyltransferase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037830 [exp] 897 / 0 AT1G04910 851 / 0.0 O-fucosyltransferase family protein (.1) Lus10017105 [exp] 790 / 0 AT1G04910 767 / 0.0 O-fucosyltransferase family protein (.1) Lus10030093 [exp] 408 / 5e-140 AT1G04910 384 / 2e-130 O-fucosyltransferase family protein (.1) Lus10026624 [exp] 286 / 2e-90 AT1G14020 767 / 0.0 O-fucosyltransferase family protein (.1) Lus10008719 [exp] 282 / 8e-89 AT1G22460 662 / 0.0 O-fucosyltransferase family protein (.1) Lus10037144 [exp] 279 / 6e-88 AT1G14020 779 / 0.0 O-fucosyltransferase family protein (.1) Lus10030437 [exp] 279 / 9e-88 AT1G14020 760 / 0.0 O-fucosyltransferase family protein (.1) Lus10028957 [exp] 271 / 3e-84 AT4G16650 771 / 0.0 O-fucosyltransferase family protein (.1) Lus10004729 [exp] 271 / 4e-84 AT4G16650 756 / 0.0 O-fucosyltransferase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G316800 [exp] 838 / 0 AT1G04910 847 / 0.0 O-fucosyltransferase family protein (.1) Potri.017G057300 [exp] 821 / 0 AT1G04910 828 / 0.0 O-fucosyltransferase family protein (.1) Potri.005G161800 [exp] 282 / 1e-88 AT1G22460 678 / 0.0 O-fucosyltransferase family protein (.1) Potri.007G011000 [exp] 279 / 5e-88 AT5G65470 784 / 0.0 O-fucosyltransferase family protein (.1) Potri.002G100400 [exp] 278 / 2e-87 AT1G22460 663 / 0.0 O-fucosyltransferase family protein (.1) Potri.008G090600 [exp] 276 / 6e-87 AT1G14020 776 / 0.0 O-fucosyltransferase family protein (.1) Potri.003G077500 [exp] 276 / 6e-86 AT4G16650 785 / 0.0 O-fucosyltransferase family protein (.1) Potri.002G105800 [exp] 273 / 1e-85 AT4G24530 807 / 0.0 O-fucosyltransferase family protein (.1) Potri.010G164700 [exp] 272 / 2e-85 AT1G14020 781 / 0.0 O-fucosyltransferase family protein (.1) Potri.008G185200 [exp] 273 / 3e-85 AT3G26370 905 / 0.0 O-fucosyltransferase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0113 [flax] [poplar] GT-B PF10250 [flax] [poplar] O-FucT GDP-fucose protein O-fucosyltransferase
Representative CDS sequence Show only first row Show all	>Lus10032603 pacid=23146445 polypeptide=Lus10032603 locus=Lus10032603.g ID=Lus10032603.BGIv1.0 annot-version=v1.0 ATGATTAATATACACTACAACAACAGCAGGTCGCACGCGAAGCTGGGAGCCGGAGCTCTGAGAGGAACGGTGGCGAAGTTATCGATTGCTGTTATAGTGC TCTTGATCTGCACACTTTCTTTCCTATTTTCCGCTACACTTACCGGGAACAAGGCATCAACCGGCCCCTCGGAGATCAATGCCGAACAGCTATGGGAGAA TGCTGATTCCGGTGGCTGGAGGCCATCATCTGCTCCTAGATCCCACTGGCCTCCTCCTCCGAAAGAGAGTAATGGATATCTCCGGGTCCGATGTAATGGT GGTCTAAACCAGCAGCGCAGTGCGATTTGTAATGCCGTTCTTGCTGCTAGAATTATGAATGCTACACTGGTGCTTCCTGAGTTGGATGCAAACTCCTTTT GGCGGGATGACAGTGGATTCCATGGGATTTATGATGTGGAACATTTTATTCATTCACTGAGGTACGATGTGCGGATTGTTGAAAGCATGCCAGAAATTCG TAAAAATGGAAAATCGAAAAAGATCAAGGCCTTCCAGATACGACCCCCTAGAGATGCACCTATTAGTTGGTACACAACAGAGGCTTTGCAGCAAATGAAG CAACATGGAGCCATATATCTAACTCCCTTTTCACACCGTTTAGCAGAGGAAATTGATTACCCCGAGTATCAGCGACTCAGATGCAGAGTTAACTATCATG CATTAAGATTTAAACCTCATATTATGAAGCTAAGTGAATCAATAGTTGAGAAACTACGTACCCAAGGTCACTTCATGGCAATACACCTTCGCTTCGAGAT GGATATGCTTGCATTTGCGGGGTGCTTTGACATATTTAGCCCCAAGGAGCAAGCAATATTGAAAAAGTATCGGGAAGAAAATTTTGCCAAGAAAAAGTTA GTGTATAATGAGAGGAGGGCTATTGGAAAATGCCCACTAACTCCAGAAGAGCCTGTGCTTAAGTTGTCATACCTCATGCTGCAGGTTGGACTTATTTTAC AAGCGATGGGTTTCGATAACTCGACTCGAATATATCTAGCAGCGGGTGAATTGTTTGGCGGGGAACGATTCATGAATCCTTTCAGGTCTCTGTTTCCTCG TCTTGAAAACCACAGTTCAGTTGATAGCTCAGAAGAGCTATCCACAAACAGCCAGGGATTGTTGGGTTCTGCAGTGGATTACATGGTCTGTCTTCTCGCG GACATCTTCATGCCAACATATGACGGACCGAGTAACTTCGCAAACAATCTACTCGGTCATCGCCTGTATTACGGGTTCAGAACAACAATCAGACCGGACA GGAAAGCACTTGCCCCGGTTTTCATCGATCGGGAGAAAGGGAAAAAATCTGGATTCGATGAAGCCGTTAGACGGGTGATGCTGACGACTAACTTCGGTGG ACCTCATAAGCGGATCTCACCGGAGTCTTTTTATACTAACTCATGGCCGGAGTGTTTCTGTCAAGCAGAGCCACAAAATGCTGCTGATAAATGCCCCCCT GATGACGTTGTGCGAAACTCAGACTCTGCATAA
AA sequence Show only first row Show all	>Lus10032603 pacid=23146445 polypeptide=Lus10032603 locus=Lus10032603.g ID=Lus10032603.BGIv1.0 annot-version=v1.0 MINIHYNNSRSHAKLGAGALRGTVAKLSIAVIVLLICTLSFLFSATLTGNKASTGPSEINAEQLWENADSGGWRPSSAPRSHWPPPPKESNGYLRVRCNG GLNQQRSAICNAVLAARIMNATLVLPELDANSFWRDDSGFHGIYDVEHFIHSLRYDVRIVESMPEIRKNGKSKKIKAFQIRPPRDAPISWYTTEALQQMK QHGAIYLTPFSHRLAEEIDYPEYQRLRCRVNYHALRFKPHIMKLSESIVEKLRTQGHFMAIHLRFEMDMLAFAGCFDIFSPKEQAILKKYREENFAKKKL VYNERRAIGKCPLTPEEPVLKLSYLMLQVGLILQAMGFDNSTRIYLAAGELFGGERFMNPFRSLFPRLENHSSVDSSEELSTNSQGLLGSAVDYMVCLLA DIFMPTYDGPSNFANNLLGHRLYYGFRTTIRPDRKALAPVFIDREKGKKSGFDEAVRRVMLTTNFGGPHKRISPESFYTNSWPECFCQAEPQNAADKCPP DDVVRNSDSA

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G04910			O-fucosyltransferase family pr...		Lus10032603 [exp]	0	1
AT1G26850			S-adenosyl-L-methionine-depend...		Lus10036747 [exp]	1.7	0.8781
AT4G00740		QUA3	QUASIMODO 3, S-adenosyl-L-meth...		Lus10041363 [exp]	3.2	0.8768
AT4G11450			Protein of unknown function (D...		Lus10002006 [exp]	3.9	0.8643
AT3G01810			unknown protein		Lus10041590 [exp]	6.0	0.8571
AT1G08660		MGP2	MALE GAMETOPHYTE DEFECTIVE 2 (...		Lus10035162 [exp]	6.2	0.8378
AT1G76400			Ribophorin I (.1)		Lus10025159 [exp]	8.8	0.8546
AT5G42080		RSW9, DRP1A, AG...	RADIAL SWELLING 9, DYNAMIN-REL...		Lus10003873 [exp]	8.9	0.8550
AT4G36360		BGAL3	beta-galactosidase 3 (.1.2)		Lus10028348 [exp]	10.2	0.8543
AT4G39690			unknown protein		Lus10022509 [exp]	10.9	0.7636
AT4G01660		ATABC1, ATATH10...	ABC transporter 1 (.1)		Lus10007201 [exp]	12.1	0.7818

Compare expression of checked genes

Lus10032603 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.