Plant FIBer expression Database

Lus10032604 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT5G49210 134 / 1e-39 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10043148
[exp]
236 / 5e-80 AT5G49210 186 / 3e-60 unknown protein
Lus10036792
[exp]
207 / 1e-68 AT5G49210 174 / 2e-55 unknown protein
Lus10037138
[exp]
195 / 8e-64 AT5G49210 167 / 2e-52 unknown protein
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.001G317300
[exp]
158 / 2e-49 AT5G49210 93 / 6e-24 unknown protein
PFAM info
Representative CDS sequence
>Lus10032604 pacid=23146269 polypeptide=Lus10032604 locus=Lus10032604.g ID=Lus10032604.BGIv1.0 annot-version=v1.0
ATGGCTGCCGCCACCACCGCTCGTGGCGTCGTCCGCGCGACGCGTCGCCTCTTCTCTTCATCCTCCTCCACCTCCGTTGCCACCGGGAAAAACAACCACA
AGGATAGTCATATGTACCTGGATAGCAATTCATTCTTAGGAAGCTGGGAGGCGCCCAAGAATCCAAAGCAGGCTGAGAAGAGACTGGCTCTGTTGCGAAG
GCAGTACGCGAAGCAAGTGAAGGAGGTACGGAAAGAATATATCGTGGAGATGGAGGCGATCCGAATCGAGAAGCAGAGGAAGGACGAAGCTAGACAAGAG
GCGATCAGGATCGCCAACGAGGAGCGCCGCAAGTTGAAGGCCGAAGCCGCCAAAGTCAGAGCGGAGGAGCGTAAAGTTGCTGAAGAGGAGTTCCGCCAAA
CCCTATTGAAAGAGAGAGCAGAGAAGCTCGAGAACTGGAGAATGAAAGAAGCTAAGAGGGTAAAGAAGAAAAAGGATGCAGAGGAGCTGCTGCGCCGGAA
AAGTTCACTGTGGGTTGATGATCAGAAAGAACTGGAAGCAAAAGTACTCGAAGCCATCTCTTCTTCCAATTTTCTCTAA
AA sequence
>Lus10032604 pacid=23146269 polypeptide=Lus10032604 locus=Lus10032604.g ID=Lus10032604.BGIv1.0 annot-version=v1.0
MAAATTARGVVRATRRLFSSSSSTSVATGKNNHKDSHMYLDSNSFLGSWEAPKNPKQAEKRLALLRRQYAKQVKEVRKEYIVEMEAIRIEKQRKDEARQE
AIRIANEERRKLKAEAAKVRAEERKVAEEEFRQTLLKERAEKLENWRMKEAKRVKKKKDAEELLRRKSSLWVDDQKELEAKVLEAISSSNFL

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT5G49210 unknown protein Lus10032604
[exp]
0 1
AT1G68760 ATNUDX1, ATNUDT... NUDIX HYDROLASE 1, ARABIDOPSIS... Lus10034784
[exp]
2.2 0.9160
AT5G46840 RNA-binding (RRM/RBD/RNP motif... Lus10000904
[exp]
4.7 0.9264
AT3G58470 nucleic acid binding;methyltra... Lus10000248
[exp]
5.7 0.9201
AT1G26910 RPL10B ribosomal protein L10 B, Ribos... Lus10015106
[exp]
5.8 0.9294
AT5G19910 MED31 SOH1 family protein (.1.2) Lus10016131
[exp]
6.0 0.9114
AT3G58680 MBF1B, ATMBF1B multiprotein bridging factor 1... Lus10013686
[exp]
7.5 0.9111
AT4G01260 GeBP DNA-binding storekeeper protei... Lus10002794
[exp]
8.7 0.8932
AT5G58710 ROC7 rotamase CYP 7 (.1) Lus10040666
[exp]
8.9 0.9082
AT1G11240 unknown protein Lus10011247
[exp]
9.2 0.9020
AT4G13870 WRNEXO, ATWRNEX... Werner syndrome-like exonuclea... Lus10039164
[exp]
9.6 0.9193

Lus10032604 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.