Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G22330 421 / 8e-151 ATCES1 Alkaline phytoceramidase (aPHC) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10032606 [exp] 523 / 0 AT4G22330 423 / 9e-152 Alkaline phytoceramidase (aPHC) (.1) Lus10043146 [exp] 518 / 0 AT4G22330 422 / 1e-151 Alkaline phytoceramidase (aPHC) (.1) Lus10043147 [exp] 516 / 0 AT4G22330 415 / 9e-149 Alkaline phytoceramidase (aPHC) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G057500 [exp] 442 / 2e-159 AT4G22330 418 / 1e-149 Alkaline phytoceramidase (aPHC) (.1) Potri.001G317400 [exp] 434 / 3e-156 AT4G22330 398 / 6e-142 Alkaline phytoceramidase (aPHC) (.1) Potri.004G001300 [exp] 434 / 6e-156 AT4G22330 437 / 3e-157 Alkaline phytoceramidase (aPHC) (.1) Potri.011G023401 [exp] 429 / 4e-154 AT4G22330 454 / 6e-164 Alkaline phytoceramidase (aPHC) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0192 [flax] [poplar] GPCR_A PF05875 [flax] [poplar] Ceramidase Ceramidase
Representative CDS sequence Show only first row Show all	>Lus10032605 pacid=23146347 polypeptide=Lus10032605 locus=Lus10032605.g ID=Lus10032605.BGIv1.0 annot-version=v1.0 ATGGCTGAAGCGATATCGAGTTTCTGGGGTCCTGTAACGTCCAACGATTGGTGTGAGAAAAATTACGTCCACTCCTCATACATTGCGGAATTCTTCAATA CCATATCAAATGTCCCTTGTATTGTTTTGGCATTTATCGGCCTCGTGAATGCCTTGAGACAGCGATTTGAAAAGAGGTTTAGCGTGCTCCATATCTCTAA CATGATCCTCGCCATTGGGAGTATGATGTACCATGCCACATTACGACATGTGCAACAACAAGGAGATGAAACTCCAATGGTATGGGAAATGCTATTGTAC TTCTACATCCTCTATTCACCAGATTGGCATTACCGGAGCACAATGCCTACATTTTTGTTCTTCTATGGAGCCGGGTTTGCAGTGATCCACGCATTAATGC GCTTTGGTGTGGCGTTCAAGGTGCACTATGCAATCCTGTGTCTCCTATGCATACCCAGGATGTACAAGTACTACATCTACACCAAGGATGCAGATGCAAA ACAACTTGCGAAATGGTACGTGGCGACCATTTTCCTCGCGACACTGTGTTGGCTTCCTGACCGCATATTGTGCAGTGAGATCTCATCCTGGCCGTTGAAT CCCCAGGGGCACGCCATGTGGCATGCCTTGATGGGCTTCAACTCGTACTTCGCCAACGCATTCCTAATGTTTTGCCGTGCGGAGCAGTTAGGGTGGAACC CCAAGGTCGTCCGTGTCTTTGGGGTATTCCCATACGTGAAGGTTCAGAAGCCAAAAGCTCAGTGA
AA sequence Show only first row Show all	>Lus10032605 pacid=23146347 polypeptide=Lus10032605 locus=Lus10032605.g ID=Lus10032605.BGIv1.0 annot-version=v1.0 MAEAISSFWGPVTSNDWCEKNYVHSSYIAEFFNTISNVPCIVLAFIGLVNALRQRFEKRFSVLHISNMILAIGSMMYHATLRHVQQQGDETPMVWEMLLY FYILYSPDWHYRSTMPTFLFFYGAGFAVIHALMRFGVAFKVHYAILCLLCIPRMYKYYIYTKDADAKQLAKWYVATIFLATLCWLPDRILCSEISSWPLN PQGHAMWHALMGFNSYFANAFLMFCRAEQLGWNPKVVRVFGVFPYVKVQKPKAQ

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G22330		ATCES1	Alkaline phytoceramidase (aPHC...		Lus10032605 [exp]	0	1
AT2G26600			Glycosyl hydrolase superfamily...		Lus10006659 [exp]	1.0	0.8706
AT4G28240			Wound-responsive family protei...		Lus10018535 [exp]	3.9	0.8281
AT1G60430		ARPC3	actin-related protein C3 (.1.2...		Lus10018909 [exp]	4.6	0.8456
AT3G20970		ATNFU2, NFU4	ARABIDOPSIS THALIANA NFU DOMAI...		Lus10034140 [exp]	6.2	0.8547
AT4G01790			Ribosomal protein L7Ae/L30e/S1...		Lus10007191 [exp]	6.9	0.8239
AT5G59610			Chaperone DnaJ-domain superfam...		Lus10016510 [exp]	7.7	0.8311
AT1G54340		ICDH	isocitrate dehydrogenase (.1)		Lus10010431 [exp]	11.2	0.8109
AT2G39435			Phosphatidylinositol N-acetygl...		Lus10003295 [exp]	12.0	0.8133
AT3G05345			Chaperone DnaJ-domain superfam...		Lus10029916 [exp]	14.7	0.8188
AT5G52210		ATGB1, ATARLB1	GTP-binding protein 1 (.1.2)		Lus10005749 [exp]	17.3	0.8087

Compare expression of checked genes

Lus10032605 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.