Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G22330 423 / 7e-152 ATCES1 Alkaline phytoceramidase (aPHC) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10032605 [exp] 523 / 0 AT4G22330 420 / 1e-150 Alkaline phytoceramidase (aPHC) (.1) Lus10043146 [exp] 523 / 0 AT4G22330 422 / 1e-151 Alkaline phytoceramidase (aPHC) (.1) Lus10043147 [exp] 517 / 0 AT4G22330 415 / 9e-149 Alkaline phytoceramidase (aPHC) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G057500 [exp] 445 / 2e-160 AT4G22330 418 / 1e-149 Alkaline phytoceramidase (aPHC) (.1) Potri.004G001300 [exp] 439 / 3e-158 AT4G22330 437 / 3e-157 Alkaline phytoceramidase (aPHC) (.1) Potri.001G317400 [exp] 437 / 2e-157 AT4G22330 398 / 6e-142 Alkaline phytoceramidase (aPHC) (.1) Potri.011G023401 [exp] 432 / 3e-155 AT4G22330 454 / 6e-164 Alkaline phytoceramidase (aPHC) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0192 [flax] [poplar] GPCR_A PF05875 [flax] [poplar] Ceramidase Ceramidase
Representative CDS sequence Show only first row Show all	>Lus10032606 pacid=23146429 polypeptide=Lus10032606 locus=Lus10032606.g ID=Lus10032606.BGIv1.0 annot-version=v1.0 ATGGCTGAAGCGATATCAAGTTTCTGGGGTCCTGTAACATCCAACGATTGGTGTGAGAAAAATTACGTCCACTCCTCATACATTGCAGAATTCTTTAACA CCATATCGAATGTCCCTTGTATTGTTTTGGCATTTATCGGCCTCGTGAATGCCTTGAGACAGCGATTTGAAAAGAGGTTTAGCGTGCTCCATATCTCTAA CATGATCCTCGCCATTGGGAGTATGATGTACCATGCCACATTACGACATGTGCAACAACAGGGAGATGAAACTCCAATGGTATGGGAGATGCTATTGTAC TTCTACATCCTCTATTCACCGGATTGGCATTACCGGAGCACAATGCCTACATTTTTGTTCTTCTACGGAGCCGGGTTCGCAGTGATCCATGCATTGATGC GCTTTGGTGTAGCGTTCAAGGTGCACTATGCAATCCTGTGTCTCCTCTGCATACCTAGGATGTACAAGTACTACATCTACACGAAGGACGTAGATGCAAA ACGACTTGCAAAGTGGTACGTGGCGACCATCTTCCTCGCAACGCTATGTTGGCTTCCTGACCGTATATTGTGCACCGAGATCTCATCTTGGCCGTTGAAT CCGCAAGGGCATGCATTGTGGCATGCGTTGATGGGCTTCAACTCATACTTCGCCAACGCATTCTTAATGTTTTGCCGTGCGGAGCAGTTAGGGTGGAACC CTAAGGTCGTCCATGCCTTTGGGGTATTCCCATACGTGAAGGTTCAGAAGCCAAAAGCTCAGTGA
AA sequence Show only first row Show all	>Lus10032606 pacid=23146429 polypeptide=Lus10032606 locus=Lus10032606.g ID=Lus10032606.BGIv1.0 annot-version=v1.0 MAEAISSFWGPVTSNDWCEKNYVHSSYIAEFFNTISNVPCIVLAFIGLVNALRQRFEKRFSVLHISNMILAIGSMMYHATLRHVQQQGDETPMVWEMLLY FYILYSPDWHYRSTMPTFLFFYGAGFAVIHALMRFGVAFKVHYAILCLLCIPRMYKYYIYTKDVDAKRLAKWYVATIFLATLCWLPDRILCTEISSWPLN PQGHALWHALMGFNSYFANAFLMFCRAEQLGWNPKVVHAFGVFPYVKVQKPKAQ

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G22330		ATCES1	Alkaline phytoceramidase (aPHC...		Lus10032606 [exp]	0	1
AT5G12240			unknown protein		Lus10026824 [exp]	5.0	0.8530
AT5G58030			Transport protein particle (TR...		Lus10036292 [exp]	5.7	0.7914
AT3G18510			unknown protein		Lus10032475 [exp]	7.1	0.8353
AT3G27050			unknown protein		Lus10035208 [exp]	7.7	0.8167
AT5G14240			Thioredoxin superfamily protei...		Lus10032064 [exp]	7.9	0.8154
AT3G05000			Transport protein particle (TR...		Lus10033832 [exp]	8.7	0.8174
AT2G25310			Protein of unknown function (D...		Lus10001955 [exp]	9.4	0.8521
AT5G35730			EXS (ERD1/XPR1/SYG1) family pr...		Lus10031575 [exp]	12.6	0.8115
AT1G57790			F-box family protein (.1)		Lus10021352 [exp]	13.0	0.8010
AT5G51510			unknown protein		Lus10027200 [exp]	18.1	0.8202

Compare expression of checked genes

Lus10032606 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.