Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G04620 763 / 0 HCAR 7-hydroxymethyl chlorophyll a \(HMChl\) reductase, coenzyme F420 hydrogenase family / dehydrogenase, beta subunit family (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10043145 [exp] 887 / 0 AT1G04620 767 / 0.0 7-hydroxymethyl chlorophyll a \(HMChl\) reductase, coenzyme F420 hydrogenase family / dehydrogenase, beta subunit family (.1) Lus10043143 [exp] 196 / 6e-62 AT1G04620 163 / 6e-50 7-hydroxymethyl chlorophyll a \(HMChl\) reductase, coenzyme F420 hydrogenase family / dehydrogenase, beta subunit family (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G062300 [exp] 784 / 0 AT1G04620 775 / 0.0 7-hydroxymethyl chlorophyll a \(HMChl\) reductase, coenzyme F420 hydrogenase family / dehydrogenase, beta subunit family (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04422 [flax] [poplar] FrhB_FdhB_N Coenzyme F420 hydrogenase/dehydrogenase, beta subunit N-term PF04432 [flax] [poplar] FrhB_FdhB_C Coenzyme F420 hydrogenase/dehydrogenase, beta subunit C terminus
Representative CDS sequence Show only first row Show all	>Lus10032607 pacid=23146357 polypeptide=Lus10032607 locus=Lus10032607.g ID=Lus10032607.BGIv1.0 annot-version=v1.0 ATGATTTCTCCCATCTGCAGCAGGCTCTCCGCACCTTTCCATGTCTCCGCCTCCGCCTCTTCTACAGATGACAGCTCCACTTCTAAGAAGAAGAAGTCTG TTGTTAAGCTAAGAGACGACTGGAGGCAACGCTCCAAACCCATCCCTCCTGGCTCCACCTATCCCGCCAAAGATCAGTGCAGCCGATGTGGGCTGTGTGA TACTTATTACATAGCTCATGTCAAGAATGCTTGTGCTTTTCTGGGAGATGGCATGTCTAGAGTTGAAGCTTTCGAACCTTTAGTCCATGGAAGAGGCAGA AAGACTGATTCTTTTGACGAAACCTACCTTGGGGTTTATGAGCAACTACTGTATGCTCGTAAGACTAAGCCCGTTGAAGGAGCTCAATGGACTGGGATAG TGACTACTATCGCCATTGAAATGCTGAAAGCTGGTATGGTTGAGGCTGTTATATGTGTACAAAGTGATCCAGACGACAGATTTTCTCCAATGCCAGTCTT AGCCAGGACCCCGGAAGAAGTTTTGGCCGCTAAAGGTGTTAAACCGACCTTATCACCTAACCTGAATACCCTTGCTTTAGTTGAGGCTGCTGGGGTAAAA CGTCTTCTCTTCTGTGGAGTGGGCTGCCAAGTGCAAGCACTGAGAAGCGTGGAGCAATATCTTAATTTGGAGAAGCTGTATGTACTCGGCACTAACTGTG TTGATAATGGAAGTCGAGAAGGACTCGATAAGTTCCTAAACGCAGCAAGTGAGGAACCAGAAACTGTCCTTCATTACGAATTCATGCAAGACTACAAGGT CCACCTGAAACATTTAGATGGCCACATTGAAGAGGTTCCTTACTTTTGCCTGCCAGCAAATGACTTGGTGGATGTTATTGCCCCATCTTGCTATAGCTGT TTCGACTACACAAATGGGTTAGCGGATCTAGTGGTTGGGTACATGGGTGTCCCCAAATATTCCCAGATTAGTATGACAAACCATCCACAATATGTTACAG TAAGGAATGAGCGAGGGAAAGAAATGCTGGACTTAGTGAAACACCTTTTGGATGTTACTCCAACAACCAGTAGTGGTAACAGAAGACCATTCGTGATGGA GACTGTCAAGGCAGATGACAATGCAAAGCTAGGAAAGGGTCCTGCTCAACCTGCTCCAAAGCTAGTTGGAAACCTGATTGCTTTTATACTGAACTTGGTC GGACCAAAGGGTCTTGAATTTGCTCGGTATTCACTCGACTACCATACGATACGGAACTATTTGTACACAAACCGTACTTGGGGGAAAGAAAGAGCTGCCA GACACACCCCTTCTTATGCGAAGAAACTTGTCGAACTTTACAACCAGAACGGGGAAATCGATCAGATGTTAAACATGAAGTGA
AA sequence Show only first row Show all	>Lus10032607 pacid=23146357 polypeptide=Lus10032607 locus=Lus10032607.g ID=Lus10032607.BGIv1.0 annot-version=v1.0 MISPICSRLSAPFHVSASASSTDDSSTSKKKKSVVKLRDDWRQRSKPIPPGSTYPAKDQCSRCGLCDTYYIAHVKNACAFLGDGMSRVEAFEPLVHGRGR KTDSFDETYLGVYEQLLYARKTKPVEGAQWTGIVTTIAIEMLKAGMVEAVICVQSDPDDRFSPMPVLARTPEEVLAAKGVKPTLSPNLNTLALVEAAGVK RLLFCGVGCQVQALRSVEQYLNLEKLYVLGTNCVDNGSREGLDKFLNAASEEPETVLHYEFMQDYKVHLKHLDGHIEEVPYFCLPANDLVDVIAPSCYSC FDYTNGLADLVVGYMGVPKYSQISMTNHPQYVTVRNERGKEMLDLVKHLLDVTPTTSSGNRRPFVMETVKADDNAKLGKGPAQPAPKLVGNLIAFILNLV GPKGLEFARYSLDYHTIRNYLYTNRTWGKERAARHTPSYAKKLVELYNQNGEIDQMLNMK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G04620		HCAR	7-hydroxymethyl chlorophyll a ...		Lus10032607 [exp]	0	1
AT5G57030		LUT2	LUTEIN DEFICIENT 2, Lycopene b...		Lus10000221 [exp]	2.4	0.9433
AT1G64430			Pentatricopeptide repeat (PPR)...		Lus10001823 [exp]	3.2	0.9418
AT4G14605			Mitochondrial transcription te...		Lus10035227 [exp]	3.7	0.9271
AT5G20140			SOUL heme-binding family prote...		Lus10001847 [exp]	4.8	0.9050
AT2G01755			unknown protein		Lus10005230 [exp]	4.9	0.9376
AT1G04620		HCAR	7-hydroxymethyl chlorophyll a ...		Lus10043145 [exp]	5.7	0.9346
AT3G11670		DGD1	DIGALACTOSYL DIACYLGLYCEROL DE...		Lus10004200 [exp]	6.0	0.9286
AT1G03160		FZL	FZO-like (.1.2)		Lus10014666 [exp]	8.1	0.9291
AT2G39930		ATISA1, ISA1	ARABIDOPSIS THALIANA ISOAMYLAS...		Lus10017149 [exp]	8.5	0.8892
AT1G54350		ABCD2	ATP-binding cassette D2, ABC t...		Lus10001839 [exp]	8.9	0.9205

Compare expression of checked genes

Lus10032607 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.