Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G04610 320 / 9e-109 YUC3 YUCCA 3 (.1) AT2G33230 308 / 5e-104 YUC7 YUCCA 7 (.1) AT1G04180 270 / 5e-89 YUC9 YUCCA 9 (.1) AT5G43890 265 / 2e-87 YUCCA5, SUPER1, YUC5 YUCCA5, SUPPRESSOR OF ER 1, Flavin-binding monooxygenase family protein (.1) AT4G28720 265 / 4e-87 YUC8 YUCCA 8, Flavin-binding monooxygenase family protein (.1) AT5G11320 235 / 9e-76 YUC4 YUCCA4, Flavin-binding monooxygenase family protein (.1.2) AT5G25620 228 / 1e-72 YUC6 YUCCA6, Flavin-binding monooxygenase family protein (.1.2) AT4G32540 211 / 4e-66 YUC1, YUC YUCCA 1, YUCCA, Flavin-binding monooxygenase family protein (.1) AT4G13260 205 / 7e-64 YUC2 YUCCA2, Flavin-binding monooxygenase family protein (.1) AT1G48910 147 / 4e-42 YUC10 YUCCA 10, Flavin-containing monooxygenase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10043142 [exp] 416 / 1e-146 AT1G04610 599 / 0.0 YUCCA 3 (.1) Lus10043144 [exp] 335 / 3e-118 AT1G04610 284 / 1e-95 YUCCA 3 (.1) Lus10023695 [exp] 344 / 5e-118 AT1G04610 692 / 0.0 YUCCA 3 (.1) Lus10035244 [exp] 335 / 2e-114 AT1G04610 692 / 0.0 YUCCA 3 (.1) Lus10000494 [exp] 287 / 1e-98 AT4G28720 318 / 2e-108 YUCCA 8, Flavin-binding monooxygenase family protein (.1) Lus10022851 [exp] 285 / 5e-95 AT4G28720 666 / 0.0 YUCCA 8, Flavin-binding monooxygenase family protein (.1) Lus10011274 [exp] 262 / 4e-86 AT4G28720 643 / 0.0 YUCCA 8, Flavin-binding monooxygenase family protein (.1) Lus10008092 [exp] 233 / 9e-75 AT5G11320 575 / 0.0 YUCCA4, Flavin-binding monooxygenase family protein (.1.2) Lus10013125 [exp] 229 / 3e-73 AT5G11320 579 / 0.0 YUCCA4, Flavin-binding monooxygenase family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G174600 [exp] 336 / 5e-115 AT1G04610 686 / 0.0 YUCCA 3 (.1) Potri.010G062400 [exp] 310 / 2e-103 AT1G04610 657 / 0.0 YUCCA 3 (.1) Potri.002G254200 [exp] 303 / 3e-102 AT4G28720 694 / 0.0 YUCCA 8, Flavin-binding monooxygenase family protein (.1) Potri.006G248200 [exp] 237 / 2e-76 AT5G11320 598 / 0.0 YUCCA4, Flavin-binding monooxygenase family protein (.1.2) Potri.006G243400 [exp] 230 / 2e-73 AT5G25620 608 / 0.0 YUCCA6, Flavin-binding monooxygenase family protein (.1.2) Potri.018G036800 [exp] 223 / 1e-70 AT5G25620 576 / 0.0 YUCCA6, Flavin-binding monooxygenase family protein (.1.2) Potri.007G028200 [exp] 221 / 3e-70 AT5G25620 495 / 5e-175 YUCCA6, Flavin-binding monooxygenase family protein (.1.2) Potri.018G033200 [exp] 218 / 4e-69 AT5G11320 546 / 0.0 YUCCA4, Flavin-binding monooxygenase family protein (.1.2) Potri.005G186100 [exp] 140 / 1e-39 AT1G21430 448 / 2e-157 Flavin-binding monooxygenase family protein (.1) Potri.002G207400 [exp] 133 / 1e-36 AT1G48910 429 / 3e-150 YUCCA 10, Flavin-containing monooxygenase family protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10032608 pacid=23146398 polypeptide=Lus10032608 locus=Lus10032608.g ID=Lus10032608.BGIv1.0 annot-version=v1.0 ATGGAAGTGTCGCTCGATCTCTGTAATTACGATGCCATCCCTACAATGGTCGTCAGAAGCTCGGTTCATGAATTGCCAAGAGAAATACTTGGGAAGTCGA CGTTCGAATTGGCGGTAACGTTGATGAAGTGGATGCCGTTATGGATGGGGGGCAAAGTACTGCTGGGTTTCACGAGGGTGATTTTGGGGAATCAGGAGAC GTACGGTCTTAAAAGGCCACAGATCGGGCCACTGGAGCTCAAGAACATCGAAGGCAAGACTCCAGTTTTGGACATTGGAGCTTTGGCCAAGATAAGATGC GGCCAAGTCAAGGTTGTCCGCGGAATCCACAAGTTCACTAATAATACCCAAGTTGAGCTCGTCAACGGCGAGATTCTGGAGATTGATTCTGTGATTTTGG CAACTGGGTATCGCAGCAATGTTCCTTCTTGGCTAAAGAGTTTGATACTTCGAAAAATAACTAGTTATAATTGCAGGAAAACGAGTTTTTTTTCGGAAGT TGGAGTGCCGAAGGATCCATTCCCAAACGGGTGGAAAGGGAAAGCAGGGCTGTATGCAGTTGGGTTCACAGGGAAGGGGCTATCGGGTGCTTCTCTTGAC GCCATTAGTGTGGCGCTCGACATTGCTAAGAGCTGGAGAGAAGATACTAAACAGAAGAAGAAGACCATGGCTGCCAAGCACAGGAGATGCATCTCTCATT TCTGGAACTCCATAACTATACTTCGAACAAAACAACACCAAGTTTAA
AA sequence Show only first row Show all	>Lus10032608 pacid=23146398 polypeptide=Lus10032608 locus=Lus10032608.g ID=Lus10032608.BGIv1.0 annot-version=v1.0 MEVSLDLCNYDAIPTMVVRSSVHELPREILGKSTFELAVTLMKWMPLWMGGKVLLGFTRVILGNQETYGLKRPQIGPLELKNIEGKTPVLDIGALAKIRC GQVKVVRGIHKFTNNTQVELVNGEILEIDSVILATGYRSNVPSWLKSLILRKITSYNCRKTSFFSEVGVPKDPFPNGWKGKAGLYAVGFTGKGLSGASLD AISVALDIAKSWREDTKQKKKTMAAKHRRCISHFWNSITILRTKQHQV

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G04610		YUC3	YUCCA 3 (.1)		Lus10032608 [exp]	0	1
AT2G18660		AtPNP-A, PNP-A,...	plant natriuretic peptide A (....		Lus10026932 [exp]	17.7	0.6333
AT1G25290		ATRBL10	RHOMBOID-like protein 10 (.1.2...		Lus10022969 [exp]	20.0	0.6869
AT5G41150		ATRAD1, UVH1	ULTRAVIOLET HYPERSENSITIVE 1, ...		Lus10000998 [exp]	33.2	0.6141
					Lus10036275 [exp]	34.4	0.6560
AT5G24090		ATCHIA	chitinase A (.1)		Lus10037984 [exp]	37.5	0.6341
AT3G06240			F-box family protein (.1)		Lus10011015 [exp]	37.5	0.6383
					Lus10015230 [exp]	50.0	0.6602
AT2G44760			Domain of unknown function (DU...		Lus10020744 [exp]	53.1	0.6145
					Lus10008153 [exp]	57.9	0.6370
AT3G62770		ATATG18A	autophagy 18a, Transducin/WD40...		Lus10023022 [exp]	60.0	0.6371

Compare expression of checked genes

Lus10032608 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.