Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G04610 238 / 2e-71 YUC3 YUCCA 3 (.1) AT2G33230 217 / 2e-63 YUC7 YUCCA 7 (.1) AT4G28720 214 / 1e-62 YUC8 YUCCA 8, Flavin-binding monooxygenase family protein (.1) AT5G43890 213 / 5e-62 YUCCA5, SUPER1, YUC5 YUCCA5, SUPPRESSOR OF ER 1, Flavin-binding monooxygenase family protein (.1) AT1G04180 212 / 9e-62 YUC9 YUCCA 9 (.1) AT3G24010 203 / 1e-60 ATING1 ARABIDOPSIS THALIANA INHIBITOR OF GROWTH 1, RING/FYVE/PHD zinc finger superfamily protein (.1) AT5G25620 181 / 1e-50 YUC6 YUCCA6, Flavin-binding monooxygenase family protein (.1.2) AT4G13260 170 / 2e-46 YUC2 YUCCA2, Flavin-binding monooxygenase family protein (.1) AT5G11320 168 / 2e-46 YUC4 YUCCA4, Flavin-binding monooxygenase family protein (.1.2) AT4G32540 162 / 2e-43 YUC1, YUC YUCCA 1, YUCCA, Flavin-binding monooxygenase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10043140 [exp] 282 / 1e-90 AT3G24010 273 / 5e-93 ARABIDOPSIS THALIANA INHIBITOR OF GROWTH 1, RING/FYVE/PHD zinc finger superfamily protein (.1) Lus10023695 [exp] 248 / 8e-75 AT1G04610 692 / 0.0 YUCCA 3 (.1) Lus10035244 [exp] 245 / 4e-74 AT1G04610 692 / 0.0 YUCCA 3 (.1) Lus10043142 [exp] 222 / 2e-65 AT1G04610 599 / 0.0 YUCCA 3 (.1) Lus10022851 [exp] 213 / 4e-62 AT4G28720 666 / 0.0 YUCCA 8, Flavin-binding monooxygenase family protein (.1) Lus10011274 [exp] 209 / 2e-60 AT4G28720 643 / 0.0 YUCCA 8, Flavin-binding monooxygenase family protein (.1) Lus10007671 [exp] 171 / 2e-46 AT4G13260 518 / 0.0 YUCCA2, Flavin-binding monooxygenase family protein (.1) Lus10011093 [exp] 170 / 3e-46 AT4G13260 566 / 0.0 YUCCA2, Flavin-binding monooxygenase family protein (.1) Lus10008092 [exp] 169 / 3e-46 AT5G11320 575 / 0.0 YUCCA4, Flavin-binding monooxygenase family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G174000 [exp] 238 / 1e-73 AT3G24010 281 / 5e-96 ARABIDOPSIS THALIANA INHIBITOR OF GROWTH 1, RING/FYVE/PHD zinc finger superfamily protein (.1) Potri.008G174600 [exp] 230 / 2e-68 AT1G04610 686 / 0.0 YUCCA 3 (.1) Potri.010G062400 [exp] 229 / 5e-67 AT1G04610 657 / 0.0 YUCCA 3 (.1) Potri.002G254200 [exp] 217 / 2e-63 AT4G28720 694 / 0.0 YUCCA 8, Flavin-binding monooxygenase family protein (.1) Potri.018G036800 [exp] 183 / 7e-51 AT5G25620 576 / 0.0 YUCCA6, Flavin-binding monooxygenase family protein (.1.2) Potri.006G243400 [exp] 182 / 1e-50 AT5G25620 608 / 0.0 YUCCA6, Flavin-binding monooxygenase family protein (.1.2) Potri.018G033200 [exp] 173 / 1e-47 AT5G11320 546 / 0.0 YUCCA4, Flavin-binding monooxygenase family protein (.1.2) Potri.007G028200 [exp] 168 / 8e-46 AT5G25620 495 / 5e-175 YUCCA6, Flavin-binding monooxygenase family protein (.1.2) Potri.006G248200 [exp] 162 / 1e-43 AT5G11320 598 / 0.0 YUCCA4, Flavin-binding monooxygenase family protein (.1.2) Potri.005G111800 [exp] 126 / 2e-31 AT1G21430 425 / 4e-148 Flavin-binding monooxygenase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF00743 [flax] [poplar] FMO-like Flavin-binding monooxygenase-like
Representative CDS sequence Show only first row Show all	>Lus10032609 pacid=23146366 polypeptide=Lus10032609 locus=Lus10032609.g ID=Lus10032609.BGIv1.0 annot-version=v1.0 ATGTCTTTCCTTGACGAGTTTCAAACCAATCTTGAGTGTCTGCCCAATATCCTGCAGAAGAAATACGCCTTATTGCGTGATCTGGATAAAAGCTTGCAAG GGATCCAGCGTCAAAATGAACAGCGTTGTGAGCAAGAAATTGAAGACATTAAGTGTAGAATTCAAGCTTCGAATACCTTTCCAGATGCTTCAACTGTTAG ATTCTCCGATGAGGCAATTGATGAGCAAAAACATAGCATCAGAATTGCTGATGAAAAGGTTGCATTGGCTGTCCAAGCATATGACCTGGTGGACGCGCAC ATTCAGCAACTTGATCAATATTTGAAGAAGTTTGATGAAGATCTCCGGCGTGAGAGAGAGAACAACACGGCATCTGGAACAGCTGCTGCAAGCTCAGATG CCAATACAAAACCTGGAAAAGGCAGTGAAGGAGGAGGAGGCAGAGGACGTAAAAAAACGCGGTTGGCAGCAGCAACTGAAGCAGCAGCTGCAACCTCATC CGCAGATCCCTCCACCACTGTGGAACTGGATATACCAGTGGATCCGAATGAACCAACCTACTGTTATTGCAATGAAGTGAGCTACGGGGACATGGTGGCT TGTGATAATCCAGACGAAATGGCTAGGGACTTGTCACGCTCCCCGCCTTTGTACAGCAGACAAAGGCGTTCCCCATCACCTGTGGGGAACAGGTATAGCA GAAGGAGCCGAAAGGACAAAAGCCAATCTCCTAAAAATTCTTCCAACACTCACAGCAGAAGGAGAAGTAGTTCAATTACTCCACACCGCCGCAGAACTCG CTCTCCAACTCCTAGACGCCGGAAAAGTCGTTCACCAACTCCAAGGCGCCTTCAGAGGCAAAGGAGCAAGAGTTCCTCACTATCTCCTACTCGTAAAACT TCTAACCCAAGTAGTGGGTTTTTGGAGCGCAAAATAAATAGTGAAAAAGTGCAAAAAGATGAGGAGGAGAAGAAGAGGCAGCAACATGAGGCAGAAATGA AGCTAGTTGAAGAAGAGACGAAAAAGCGGGTGGAAGAAGCTATTAAGAGGAAAGTTGAGGAGAGCTTGAGCACCGAAGAGATAAAACAGGATATAAAAAG GCGATTGGATGATGGACGAAGAACACTGATGGATGAAGTGGCTGCTCAACTTGAGAAAGAAATGGAAGCGGCTGCTGTAGAAAGTAAAGAAAAAGAGGAA AGAGCACGGAAAGAGAAGGAAGAGTGGGAAAGGCTGGCAGATGCGCAGAGAAGGAAGATGGAAGAAGCTCAAAGAAGAGAAGCAATGGAGCAGATGAAGA AGGAAGAGGAAAGGTATAGGGAGCTGGAAGAGTTGCAGAGACAGAAGGAGGAAGCAATGAGAAGAAAGAAGCAGCAAGAGGAGGAAGAACGTTCAAAGCA GATGAAGTTGTTGGGGCGAGGGTTTGTGATCAAGAACTCTACCACGACGATCTCGTGGACTCACATGCAGACAAAAGATGCTATATGGTCTCTTAAGGTG GCCGAAGCGGCGGCTTTGTTGGAAGCCATTCAGTGGGTACTCTCTTTTGGTTATCAGAAGGAAGATTTCTTCTTCCGATCATCCACCCGCCGCCGCAGCA TATGGGTCAACGGACCTGTCATATTCGGCGCCGGACCTTCCGGTCTAGCCGTCGGAGCTTCTTTCAAAAGACAAGGCGTCTCTTTCATCGTCCTCGAGCG AGCCGACTGCATTGCTTCCCTCTGGCAAAAAAGAACCTACCACCGCCTCAAACTCCACCTCCCCAAGAACTTCTGCCAGCTCCCCAATTTCCCCTTCCCC AGCCATTTCACAGAATACCCTTCCAAGTTCCAGTTCATCACCTATCTCGAAGCCTACGCCAGGCAGTTCGACATCACCCCGCAGTTCAACGAGACGGTCA AGTCCGCCAAATACGACCAGACGTTCGGTCTCTGGCGGATCAAGACCGTCTCCCACGCGGGCCCGTTTTCCGCTGAGCTGGAGTACATATGTCGTTGGAT AGTGGTGGCCACCGGAGTTCCAGGGGCTGGATGGAGATTTTGCCGGGGATGTCGCGCATGCATGTGA
AA sequence Show only first row Show all	>Lus10032609 pacid=23146366 polypeptide=Lus10032609 locus=Lus10032609.g ID=Lus10032609.BGIv1.0 annot-version=v1.0 MSFLDEFQTNLECLPNILQKKYALLRDLDKSLQGIQRQNEQRCEQEIEDIKCRIQASNTFPDASTVRFSDEAIDEQKHSIRIADEKVALAVQAYDLVDAH IQQLDQYLKKFDEDLRRERENNTASGTAAASSDANTKPGKGSEGGGGRGRKKTRLAAATEAAAATSSADPSTTVELDIPVDPNEPTYCYCNEVSYGDMVA CDNPDEMARDLSRSPPLYSRQRRSPSPVGNRYSRRSRKDKSQSPKNSSNTHSRRRSSSITPHRRRTRSPTPRRRKSRSPTPRRLQRQRSKSSSLSPTRKT SNPSSGFLERKINSEKVQKDEEEKKRQQHEAEMKLVEEETKKRVEEAIKRKVEESLSTEEIKQDIKRRLDDGRRTLMDEVAAQLEKEMEAAAVESKEKEE RARKEKEEWERLADAQRRKMEEAQRREAMEQMKKEEERYRELEELQRQKEEAMRRKKQQEEEERSKQMKLLGRGFVIKNSTTTISWTHMQTKDAIWSLKV AEAAALLEAIQWVLSFGYQKEDFFFRSSTRRRSIWVNGPVIFGAGPSGLAVGASFKRQGVSFIVLERADCIASLWQKRTYHRLKLHLPKNFCQLPNFPFP SHFTEYPSKFQFITYLEAYARQFDITPQFNETVKSAKYDQTFGLWRIKTVSHAGPFSAELEYICRWIVVATGVPGAGWRFCRGCRACM

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G04610		YUC3	YUCCA 3 (.1)		Lus10032609 [exp]	0	1
					Lus10015592 [exp]	1.7	0.9106
AT5G67380		ATCKA1, CKA1	casein kinase alpha 1 (.1.2)		Lus10032849 [exp]	2.8	0.9110
AT1G76140			Prolyl oligopeptidase family p...		Lus10034558 [exp]	3.5	0.9074
					Lus10012945 [exp]	4.7	0.8903
AT1G15200			protein-protein interaction re...		Lus10023800 [exp]	5.0	0.9180
AT3G27670		RST1	RESURRECTION1, ARM repeat supe...		Lus10010374 [exp]	6.5	0.8989
AT3G23100		XRCC4	homolog of human DNA ligase iv...		Lus10021220 [exp]	6.7	0.8875
AT1G35190			2-oxoglutarate (2OG) and Fe(II...		Lus10011126 [exp]	7.1	0.9019
AT5G62950			RNA polymerase II, Rpb4, core ...		Lus10039583 [exp]	8.5	0.8795
					Lus10006003 [exp]	12.2	0.8710

Compare expression of checked genes

Lus10032609 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.