Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G32710 138 / 2e-39 ICK7, ACK2, KRP4 KIP-RELATED PROTEIN 4, INTERACTORS OF CDC2 KINASE 7, CYCLIN-DEPENDENT KINASE INHIBITOR 2, Cyclin-dependent kinase inhibitor family protein (.1.2) AT5G48820 108 / 2e-28 ICK6, KRP3 KIP-RELATED PROTEIN 3, inhibitor/interactor with cyclin-dependent kinase (.1.2) AT3G24810 61 / 5e-11 ICK3, KRP5 kip-related protein 5, Cyclin-dependent kinase inhibitor family protein (.1) AT1G49620 55 / 4e-09 ICN6, ICK5, KRP7 KIP-RELATED PROTEIN 7, Cyclin-dependent kinase inhibitor family protein (.1) AT3G19150 52 / 5e-08 ACK1, ICK4, KRP6 ARABIDOPSIS CDK INHIBITOR 1, KIP-related protein 6 (.1.2) AT2G23430 45 / 8e-06 ICK1, KRP1 KIP-RELATED PROTEIN 1, Cyclin-dependent kinase inhibitor family protein (.1) AT3G50630 42 / 0.0002 ICK2, KRP2 KIP-related protein 2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10043139 [exp] 419 / 7e-150 AT2G32710 143 / 2e-41 KIP-RELATED PROTEIN 4, INTERACTORS OF CDC2 KINASE 7, CYCLIN-DEPENDENT KINASE INHIBITOR 2, Cyclin-dependent kinase inhibitor family protein (.1.2) Lus10011862 [exp] 106 / 1e-27 AT5G48820 146 / 2e-43 KIP-RELATED PROTEIN 3, inhibitor/interactor with cyclin-dependent kinase (.1.2) Lus10022796 [exp] 75 / 1e-15 AT5G48820 94 / 4e-23 KIP-RELATED PROTEIN 3, inhibitor/interactor with cyclin-dependent kinase (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G054000 [exp] 172 / 4e-53 AT5G48820 127 / 3e-36 KIP-RELATED PROTEIN 3, inhibitor/interactor with cyclin-dependent kinase (.1.2) Potri.001G314000 [exp] 161 / 1e-48 AT5G48820 131 / 2e-37 KIP-RELATED PROTEIN 3, inhibitor/interactor with cyclin-dependent kinase (.1.2) Potri.002G242100 [exp] 132 / 7e-38 AT5G48820 177 / 6e-56 KIP-RELATED PROTEIN 3, inhibitor/interactor with cyclin-dependent kinase (.1.2) Potri.004G142100 [exp] 55 / 6e-09 AT1G49620 91 / 7e-23 KIP-RELATED PROTEIN 7, Cyclin-dependent kinase inhibitor family protein (.1) Potri.009G103600 [exp] 52 / 5e-08 AT1G49620 92 / 6e-23 KIP-RELATED PROTEIN 7, Cyclin-dependent kinase inhibitor family protein (.1) Potri.007G042300 [exp] 47 / 4e-06 AT2G23430 / KIP-RELATED PROTEIN 1, Cyclin-dependent kinase inhibitor family protein (.1) Potri.005G137500 [exp] 41 / 0.0004 AT3G19150 50 / 2e-07 ARABIDOPSIS CDK INHIBITOR 1, KIP-related protein 6 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF02234 [flax] [poplar] CDI Cyclin-dependent kinase inhibitor
Representative CDS sequence Show only first row Show all	>Lus10032611 pacid=23146300 polypeptide=Lus10032611 locus=Lus10032611.g ID=Lus10032611.BGIv1.0 annot-version=v1.0 ATGGGAAGGTACGTGGCCAAGACAAAGAGAACCGGCCACGTCGCCGGAATAGACCTCTCCCTCGGCGGTGTCCGTACCAGAGCCAAAACCCTAGCTCTCC TCCGCCTTCAACAGCAGCAAACCACCCAAAAATTGCATGCTTCTCCTCTGTCTTGTCCTCCGCCAGATGATGCTGCTGCTCCTGCCTCCGCTGGATATCT GCAGCTTCGGAGCCGCCGTCTTGAGAAGGCCCCGGTTGTGTTGTACAGCTCTAACCGGCGACAGTCCAAGCAGGCTGATGATGTTGCTGACGAAGTGGCT GGTGGTGGAAACCCTAACCCTAACCCTAGCCATGTTCACGACTCGGATTCTTCTGGGGTTAAGGATCAGAAGTGGGGGAAAGAGAGGATTGGTGAAATTA GGCACGGTGAGGAAGTAGTTCAGCAGCTTAACGACCAAGGGAAGGACAGTAATCAGAACAGGGATTTGGGTTTGGAGGCTTCTTTTGGGGAGAATTGCTT GGAGATTGAGGGCAGAGATAGAAGCACCAGGGAATCCACACCTTGCAGCCTGATAAGAGACCCGGAAACAATAAGAACACCCGCATCCACCACTCGACCT ACCTGCTCAAACAATGCTAGCACTAGAATGCAAAACTCAGCGACCACTCGAATCCCAACAGCACGGGAAATGGATGAGTTCTTTGCTGGAGCTGAAGAAG CACAAGTGAAACAGTTTATCGACAAGTATAACTTTGACCCCGTTAACGAGAAACCTCTCCCTCCTGGACGTTATGAATGGGAGAAAATAGACCCTTAG
AA sequence Show only first row Show all	>Lus10032611 pacid=23146300 polypeptide=Lus10032611 locus=Lus10032611.g ID=Lus10032611.BGIv1.0 annot-version=v1.0 MGRYVAKTKRTGHVAGIDLSLGGVRTRAKTLALLRLQQQQTTQKLHASPLSCPPPDDAAAPASAGYLQLRSRRLEKAPVVLYSSNRRQSKQADDVADEVA GGGNPNPNPSHVHDSDSSGVKDQKWGKERIGEIRHGEEVVQQLNDQGKDSNQNRDLGLEASFGENCLEIEGRDRSTRESTPCSLIRDPETIRTPASTTRP TCSNNASTRMQNSATTRIPTAREMDEFFAGAEEAQVKQFIDKYNFDPVNEKPLPPGRYEWEKIDP

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G32710		ICK7, ACK2, KRP...	KIP-RELATED PROTEIN 4, INTERAC...		Lus10032611 [exp]	0	1
AT1G03910			unknown protein		Lus10027731 [exp]	1.4	0.7533
AT5G59830			unknown protein		Lus10005889 [exp]	2.2	0.7275
AT1G48420		DCD, ATACD1, AC...	A. THALIANA 1-AMINOCYCLOPROPAN...		Lus10031898 [exp]	7.9	0.7591
AT5G53440			unknown protein		Lus10019025 [exp]	10.8	0.7313
AT5G55040			DNA-binding bromodomain-contai...		Lus10043121 [exp]	12.0	0.7105
AT1G29220			transcriptional regulator fami...		Lus10007288 [exp]	20.3	0.6222
AT1G07360	C3HZnF	MAC5A	MOS4-associated complex subuni...		Lus10020512 [exp]	20.6	0.7359
AT5G41620			unknown protein		Lus10007858 [exp]	25.3	0.6513
AT5G53440			unknown protein		Lus10005006 [exp]	29.5	0.7066
AT5G06460		ATUBA2 ,UBA 2	ARABIDOPSIS THALIANA UBIQUITI...		Lus10031292 [exp]	34.3	0.6979

Compare expression of checked genes

Lus10032611 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.