Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G32720 218 / 2e-74 B5 #4, B5#4, ATCB5-B ARABIDOPSIS CYTOCHROME B5 ISOFORM B, cytochrome B5 isoform B (.1) AT5G53560 197 / 3e-66 B5#2, ATB5-A, ATCB5-E ARABIDOPSIS CYTOCHROME B5 ISOFORM E, cytochrome B5 isoform E (.1) AT5G48810 189 / 7e-63 B5#3, ATB5-B, ATCB5-D ARABIDOPSIS CYTOCHROME B5 ISOFORM D, cytochrome B5 isoform D (.1) AT1G26340 117 / 9e-35 B5 #6, B5#6, ATCB5-A ARABIDOPSIS CYTOCHROME B5 ISOFORM A, cytochrome B5 isoform A (.1) AT2G46650 115 / 7e-34 B5 #1, B5#1, ATCB5-C ARABIDOPSIS CYTOCHROME B5 ISOFORM C, cytochrome B5 isoform C (.1) AT1G37130 78 / 2e-17 NIA2-1, CHL3, B29, NR2, NIA2, ATNR2 CHLORATE RESISTANT 3, ARABIDOPSIS NITRATE REDUCTASE 2, nitrate reductase 2 (.1) AT1G60660 72 / 5e-17 B5 #5, B5#5, ATCB5LP ARABIDOPSIS CYTOCHROME B5-LIKE PROTEIN, cytochrome B5-like protein (.1) AT1G77760 72 / 2e-15 GNR1, NIA1 nitrate reductase 1 (.1) AT3G61580 56 / 7e-10 AtSLD1 sphingoid LCB desaturase 1, Fatty acid/sphingolipid desaturase (.1) AT5G09680 50 / 3e-08 RLF reduced lateral root formation (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10043137 [exp] 283 / 4e-100 AT2G32720 218 / 2e-74 ARABIDOPSIS CYTOCHROME B5 ISOFORM B, cytochrome B5 isoform B (.1) Lus10008838 [exp] 202 / 2e-68 AT5G53560 232 / 3e-80 ARABIDOPSIS CYTOCHROME B5 ISOFORM E, cytochrome B5 isoform E (.1) Lus10022357 [exp] 201 / 7e-68 AT5G53560 231 / 2e-79 ARABIDOPSIS CYTOCHROME B5 ISOFORM E, cytochrome B5 isoform E (.1) Lus10022794 [exp] 199 / 8e-67 AT2G32720 211 / 1e-71 ARABIDOPSIS CYTOCHROME B5 ISOFORM B, cytochrome B5 isoform B (.1) Lus10011858 [exp] 197 / 3e-66 AT2G32720 211 / 5e-72 ARABIDOPSIS CYTOCHROME B5 ISOFORM B, cytochrome B5 isoform B (.1) Lus10005992 [exp] 134 / 4e-41 AT5G53560 144 / 2e-45 ARABIDOPSIS CYTOCHROME B5 ISOFORM E, cytochrome B5 isoform E (.1) Lus10030219 [exp] 120 / 5e-36 AT5G53560 151 / 4e-48 ARABIDOPSIS CYTOCHROME B5 ISOFORM E, cytochrome B5 isoform E (.1) Lus10012615 [exp] 108 / 3e-31 AT2G32720 135 / 4e-42 ARABIDOPSIS CYTOCHROME B5 ISOFORM B, cytochrome B5 isoform B (.1) Lus10000651 [exp] 108 / 3e-31 AT1G26340 194 / 7e-65 ARABIDOPSIS CYTOCHROME B5 ISOFORM A, cytochrome B5 isoform A (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G054300 [exp] 214 / 6e-73 AT2G32720 221 / 6e-76 ARABIDOPSIS CYTOCHROME B5 ISOFORM B, cytochrome B5 isoform B (.1) Potri.001G314200 [exp] 209 / 5e-71 AT2G32720 199 / 3e-67 ARABIDOPSIS CYTOCHROME B5 ISOFORM B, cytochrome B5 isoform B (.1) Potri.002G242500 [exp] 201 / 1e-67 AT2G32720 221 / 7e-76 ARABIDOPSIS CYTOCHROME B5 ISOFORM B, cytochrome B5 isoform B (.1) Potri.012G024600 [exp] 142 / 1e-44 AT5G53560 163 / 5e-53 ARABIDOPSIS CYTOCHROME B5 ISOFORM E, cytochrome B5 isoform E (.1) Potri.015G007600 [exp] 133 / 7e-41 AT5G53560 153 / 8e-49 ARABIDOPSIS CYTOCHROME B5 ISOFORM E, cytochrome B5 isoform E (.1) Potri.010G156900 [exp] 110 / 5e-32 AT1G26340 166 / 4e-54 ARABIDOPSIS CYTOCHROME B5 ISOFORM A, cytochrome B5 isoform A (.1) Potri.014G019200 [exp] 102 / 1e-28 AT5G48810 115 / 8e-34 ARABIDOPSIS CYTOCHROME B5 ISOFORM D, cytochrome B5 isoform D (.1) Potri.002G088600 [exp] 76 / 6e-17 AT1G77760 1394 / 0.0 nitrate reductase 1 (.1) Potri.018G087600 [exp] 70 / 4e-16 AT1G60660 155 / 4e-50 ARABIDOPSIS CYTOCHROME B5-LIKE PROTEIN, cytochrome B5-like protein (.1) Potri.005G172400 [exp] 72 / 2e-15 AT1G37130 1400 / 0.0 CHLORATE RESISTANT 3, ARABIDOPSIS NITRATE REDUCTASE 2, nitrate reductase 2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00173 [flax] [poplar] Cyt-b5 Cytochrome b5-like Heme/Steroid binding domain
Representative CDS sequence Show only first row Show all	>Lus10032612 pacid=23146266 polypeptide=Lus10032612 locus=Lus10032612.g ID=Lus10032612.BGIv1.0 annot-version=v1.0 ATGGGCGGCGGCGATGAGGGAAAGATCTTCACTTTGACTCAAGTCGCTGAGCACGACAACGCTAAGGATTGTTGGCTCATCATCGGTGACAAGGTCTATG ATGTGACTCCTTTCTTGGAAGACCACCCTGGTGGCGATGAGGTTTTGCTGTCGGCAACAGGGAAGGATGCAACGGACGATTTCGAGGATGTAGGCCACAG CGACAGTGCAAGGGAAATGCTGGACAAGTACTATGTTGGAAACATCGATGTGTCGACCATTCCAAAGAAGAGCACCTATAAGCCTCCGAACCAGCCTCAC TATAACCAGGATAAGACCACAGAGTTCATCATCAAGCTCCTGCAGTTCCTAGTTCCCATTGCCATCTTGGGGTTGGCTTTCGCTATCCGCTTCTACACCA AGAAAACCGAATGA
AA sequence Show only first row Show all	>Lus10032612 pacid=23146266 polypeptide=Lus10032612 locus=Lus10032612.g ID=Lus10032612.BGIv1.0 annot-version=v1.0 MGGGDEGKIFTLTQVAEHDNAKDCWLIIGDKVYDVTPFLEDHPGGDEVLLSATGKDATDDFEDVGHSDSAREMLDKYYVGNIDVSTIPKKSTYKPPNQPH YNQDKTTEFIIKLLQFLVPIAILGLAFAIRFYTKKTE

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G32720		B5 #4, B5#4, AT...	ARABIDOPSIS CYTOCHROME B5 ISOF...		Lus10032612 [exp]	0	1
AT5G55490		GEX1, ATGEX1	gamete expressed protein 1 (.1...		Lus10042450 [exp]	3.7	0.6831
AT5G64130			cAMP-regulated phosphoprotein ...		Lus10036768 [exp]	11.0	0.6711
AT2G35605			SWIB/MDM2 domain superfamily p...		Lus10034774 [exp]	12.2	0.6525
AT3G14130			Aldolase-type TIM barrel famil...		Lus10013171 [exp]	16.5	0.5985
AT5G62575		SDH7B, SDH7	succinate dehydrogenase 7B, su...		Lus10042141 [exp]	27.0	0.5932
AT5G02440			unknown protein		Lus10016560 [exp]	31.1	0.5812
AT4G35020		ROP6, ARAC3, RH...	RHO-RELATED PROTEIN FROM PLANT...		Lus10014123 [exp]	34.8	0.6500
AT5G11160		APT5	adenine phosphoribosyltransfer...		Lus10002924 [exp]	65.7	0.5732
AT1G63610			unknown protein		Lus10013233 [exp]	69.5	0.5791
AT1G62700	NAC	ANAC026, VND5	VASCULAR RELATED NAC-DOMAIN PR...		Lus10004338 [exp]	72.7	0.5830

Compare expression of checked genes

Lus10032612 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.