Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G13420 664 / 0 Aldolase-type TIM barrel family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10043136 [exp] 813 / 0 AT5G13420 671 / 0.0 Aldolase-type TIM barrel family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G068200 [exp] 721 / 0 AT5G13420 668 / 0.0 Aldolase-type TIM barrel family protein (.1) Potri.003G161900 [exp] 567 / 0 AT5G13420 529 / 0.0 Aldolase-type TIM barrel family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0036 [flax] [poplar] TIM_barrel PF00923 [flax] [poplar] TAL_FSA Transaldolase/Fructose-6-phosphate aldolase
Representative CDS sequence Show only first row Show all	>Lus10032613 pacid=23146270 polypeptide=Lus10032613 locus=Lus10032613.g ID=Lus10032613.BGIv1.0 annot-version=v1.0 ATGGCTACCATTTCCAAGCTCTCCAATCTCCACCATCCTTCTCTCCTTTTCTCCCACCCCAACACTTCCTCCTCCATCTCCACCATCTCCTTTCTCCCCG CCGCCTCCAACCCATCTTCTTCTCCTTCCCTCCGATTCGCCTCGAGACCCTCCGCCCGCTCTTTCCTTGTTAAGTGCTCTGTTTCCGCTGGGAATAATGG AAGCTCAATCAAGAGAACTACTCTTCACGATCTCTATGAAAAGGAGGGTCAGAGTCCTTGGTATGATAACCTCTGCCGTCCTGTCACGGATCTCATCCCT CTGATTGACACTGGTGTTCGAGGTGTTACCAGCAACCCTGCGATTTTCCAGAAGGCCATCTCATCGTCAAATGCCTACAATGACCAATTCAAGGAACTTG TACAGTCAGGAACAGATATTGAGAAAGCCTATTGGGAACTTGTAATTAAGGATATTCAGGATGCATGCAAACTTTTTGAGACCATCTATGATCAGACGGA TGGGGCTGATGGCTATGTCTCTGTAGAGGTTTCTCCTAGACTAGCTGATGACACTCAAGGGACTGTTGAGGCTGCGAAATGGCTGCATAAGGTGGTTGAT CGTCCTAATGTGTACATCAAGATTCCTGCTACAGCTGCTTGCGTGCCATCGATTAAGGACACCATTTCACTTGGCATCAGCGTGAACGTGACTTTGATCT TCTCTTTGGCTAGATATGAAGCTGTCATCGATGCGTACTTGGATGGTCTCGAGGCATCTGGCTTATCAGACCTTTCTAGAGTGACGAGTGTTGCTTCCTT CTTCGTAAGTAGGGTTGACACCCTGATCGACAAAATGCTGGAGAAGATTGGGACCCCGGAGGCGCTAGATCTCCGTGGAAAGGCTGCTGTAGCTCAAGCA GGGCTGGCATACCAACTTTACCAAAAGAAATTCTCTGGACCAAGATGGGAGGCGTTGGTGAAGAAGGGTGCCAAGAAGCAGAGGCTGCTATGGGCATCAA CCAGCGTTAAGAATCCTGCCTATCCCGATACTCTATATGTAGCACCCCTCATTGGACCGGACACGGTATCCACGATGCCTGATCAAGCACTGCAAGCGTT CGTTGATCATGGAGCGGTCGGGAGGACGATCGATGCGAATGTGTCGGAGGCGGAAGGAGTATACAGTGCGCTGGAGAAACTGGGGATAGAATGGAGTCAA GTAGGGGATCAGCTGGAGGCAGAAGGAGTTGATTCGTTCAAGAAGAGCTTTGACAGTCTGTTGGATACCCTCCAAGAAAAGGCCAACTCCCTCAAGCTGG TTAGCATGTAA
AA sequence Show only first row Show all	>Lus10032613 pacid=23146270 polypeptide=Lus10032613 locus=Lus10032613.g ID=Lus10032613.BGIv1.0 annot-version=v1.0 MATISKLSNLHHPSLLFSHPNTSSSISTISFLPAASNPSSSPSLRFASRPSARSFLVKCSVSAGNNGSSIKRTTLHDLYEKEGQSPWYDNLCRPVTDLIP LIDTGVRGVTSNPAIFQKAISSSNAYNDQFKELVQSGTDIEKAYWELVIKDIQDACKLFETIYDQTDGADGYVSVEVSPRLADDTQGTVEAAKWLHKVVD RPNVYIKIPATAACVPSIKDTISLGISVNVTLIFSLARYEAVIDAYLDGLEASGLSDLSRVTSVASFFVSRVDTLIDKMLEKIGTPEALDLRGKAAVAQA GLAYQLYQKKFSGPRWEALVKKGAKKQRLLWASTSVKNPAYPDTLYVAPLIGPDTVSTMPDQALQAFVDHGAVGRTIDANVSEAEGVYSALEKLGIEWSQ VGDQLEAEGVDSFKKSFDSLLDTLQEKANSLKLVSM

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G13420			Aldolase-type TIM barrel famil...		Lus10032613 [exp]	0	1
AT2G31390		STH	pfkB-like carbohydrate kinase ...		Lus10009526 [exp]	1.0	0.9668
AT2G32720		B5 #4, B5#4, AT...	ARABIDOPSIS CYTOCHROME B5 ISOF...		Lus10022794 [exp]	2.4	0.9447
AT2G22250		ATAAT, AAT, MEE...	MATERNAL EFFECT EMBRYO ARREST ...		Lus10032388 [exp]	2.4	0.9424
AT2G39770		VTC1, SOZ1, GMP...	VITAMIN C DEFECTIVE 1, SENSITI...		Lus10024356 [exp]	2.4	0.9291
AT2G40890		REF8, CYP98A3, ...	cytochrome P450, family 98, su...		Lus10020847 [exp]	3.2	0.9339
AT4G35630		PSAT	phosphoserine aminotransferase...		Lus10039587 [exp]	4.0	0.9265
AT2G37040		PAL1, ATPAL1	PHE ammonia lyase 1 (.1)		Lus10013805 [exp]	4.0	0.9380
AT2G01140		PDE345	PIGMENT DEFECTIVE 345, Aldolas...		Lus10035247 [exp]	4.2	0.9235
AT1G70985			hydroxyproline-rich glycoprote...		Lus10034112 [exp]	5.3	0.9094
AT5G24400		PGL3, EMB2024	6-PHOSPHOGLUCONOLACTONASE 3, E...		Lus10022352 [exp]	6.5	0.9275

Compare expression of checked genes

Lus10032613 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.