Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G32700 971 / 0 MUM1, LUH MUCILAGE-MODIFIED 1, LEUNIG_homolog (.1.2.3.4.5.6.7) AT4G32551 444 / 4e-143 RON2, LUG ROTUNDA 2, LEUNIG, LisH dimerisation motif;WD40/YVTN repeat-like-containing domain (.1.2) AT4G02730 92 / 7e-20 AtWDR5b human WDR5 \(WD40 repeat\) homolog b, Transducin/WD40 repeat-like superfamily protein (.1) AT5G08390 94 / 2e-19 Transducin/WD40 repeat-like superfamily protein (.1) AT5G23430 91 / 2e-18 Transducin/WD40 repeat-like superfamily protein (.1.2) AT2G41500 90 / 2e-18 EMB2776, LIS LACHESIS, WD-40 repeat family protein / small nuclear ribonucleoprotein Prp4p-related (.1) AT1G11160 86 / 4e-17 Transducin/WD40 repeat-like superfamily protein (.1) AT1G61210 86 / 9e-17 DWA3 DWD hypersensitive to ABA 3, Transducin/WD40 repeat-like superfamily protein (.1.2) AT3G49660 82 / 1e-16 AtWDR5a human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1) AT5G67320 81 / 1e-15 HOS15 high expression of osmotically responsive genes 15, WD-40 repeat family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10043135 [exp] 1370 / 0 AT2G32700 1073 / 0.0 MUCILAGE-MODIFIED 1, LEUNIG_homolog (.1.2.3.4.5.6.7) Lus10022797 [exp] 862 / 0 AT2G32700 903 / 0.0 MUCILAGE-MODIFIED 1, LEUNIG_homolog (.1.2.3.4.5.6.7) Lus10011863 [exp] 852 / 0 AT2G32700 909 / 0.0 MUCILAGE-MODIFIED 1, LEUNIG_homolog (.1.2.3.4.5.6.7) Lus10017754 [exp] 378 / 7e-118 AT4G32551 778 / 0.0 ROTUNDA 2, LEUNIG, LisH dimerisation motif;WD40/YVTN repeat-like-containing domain (.1.2) Lus10033066 [exp] 371 / 1e-115 AT4G32551 746 / 0.0 ROTUNDA 2, LEUNIG, LisH dimerisation motif;WD40/YVTN repeat-like-containing domain (.1.2) Lus10014674 [exp] 101 / 3e-23 AT4G02730 508 / 0.0 human WDR5 \(WD40 repeat\) homolog b, Transducin/WD40 repeat-like superfamily protein (.1) Lus10006916 [exp] 100 / 1e-22 AT4G02730 506 / 0.0 human WDR5 \(WD40 repeat\) homolog b, Transducin/WD40 repeat-like superfamily protein (.1) Lus10021059 [exp] 101 / 6e-22 AT2G41500 706 / 0.0 LACHESIS, WD-40 repeat family protein / small nuclear ribonucleoprotein Prp4p-related (.1) Lus10004167 [exp] 96 / 3e-20 AT2G41500 708 / 0.0 LACHESIS, WD-40 repeat family protein / small nuclear ribonucleoprotein Prp4p-related (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G049400 [exp] 1098 / 0 AT2G32700 1057 / 0.0 MUCILAGE-MODIFIED 1, LEUNIG_homolog (.1.2.3.4.5.6.7) Potri.003G178600 [exp] 1075 / 0 AT2G32700 1051 / 0.0 MUCILAGE-MODIFIED 1, LEUNIG_homolog (.1.2.3.4.5.6.7) Potri.002G241800 [exp] 866 / 0 AT2G32700 899 / 0.0 MUCILAGE-MODIFIED 1, LEUNIG_homolog (.1.2.3.4.5.6.7) Potri.006G248100 [exp] 450 / 1e-145 AT4G32551 996 / 0.0 ROTUNDA 2, LEUNIG, LisH dimerisation motif;WD40/YVTN repeat-like-containing domain (.1.2) Potri.018G033300 [exp] 435 / 4e-139 AT4G32551 657 / 0.0 ROTUNDA 2, LEUNIG, LisH dimerisation motif;WD40/YVTN repeat-like-containing domain (.1.2) Potri.004G045601 [exp] 379 / 5e-121 AT2G32700 354 / 1e-111 MUCILAGE-MODIFIED 1, LEUNIG_homolog (.1.2.3.4.5.6.7) Potri.002G051900 [exp] 98 / 4e-22 AT4G02730 524 / 0.0 human WDR5 \(WD40 repeat\) homolog b, Transducin/WD40 repeat-like superfamily protein (.1) Potri.008G002300 [exp] 97 / 1e-20 AT5G08390 1006 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Potri.006G045800 [exp] 93 / 2e-19 AT2G41500 614 / 0.0 LACHESIS, WD-40 repeat family protein / small nuclear ribonucleoprotein Prp4p-related (.1) Potri.011G045500 [exp] 88 / 1e-17 AT1G61210 723 / 0.0 DWD hypersensitive to ABA 3, Transducin/WD40 repeat-like superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0186 [flax] [poplar] Beta_propeller PF00400 [flax] [poplar] WD40 WD domain, G-beta repeat CL0561 [flax] [poplar] LisH PF08513 [flax] [poplar] LisH LisH
Representative CDS sequence Show only first row Show all	>Lus10032614 pacid=23146263 polypeptide=Lus10032614 locus=Lus10032614.g ID=Lus10032614.BGIv1.0 annot-version=v1.0 ATGGCGCAGAGTAATTGGGAGGCAGATAAGATGCTTGATGTCTACATATACGATTATTTGGTGAAGAAGAAGTTGCATACTGCCGCCAAGGCCTTCATGA ATGAAGGCAAGGTTTCCCCTGATCCCGTAGCTATTGACGCTCCAGGAGGGTGTGTCCTAGCTATTGACTCTCCAGGAGGGTTTCTGTTTGAGTGGTGGTC TGTGTTTTGGGATATATTTATAGCGAGGACAAATGAGAAACATTCTGAGCCTGCTGCTGCTTATATTGAGACACAACAAATCAAGGTAAAGGAACAGCAG ATACAAATGCAACAGTTACAGCTGATGCGCCAAGCACAAATGCAACGTGGAGGTCCTAATATGTCAACCCTTGGTGGTCCGGTAAATGCCATAAGTTCTG AAGGAATGCTGGGGCAATCAAATGCCACCGCTTTAACTGCTAAAATGTATGAAGAACGTATGAAACACTCGAATCAAATGGACTCGGAAACATCTCAACC TCTTCTTGACCCTAGGATGGCCCTCCAAAAATCTGCTGCCAACCACCCTGGCCAGTTGGTCCAGGGAAATTCTGGAAATGCATCTACTGCGTTGCAGCAA ATGCAGGCTCGTACACAGCAGAGCAATGACATAAAGGGGGAAGTCAGCATTAGTGCTGGTCAGAGATCATTGTCAATGGATCCTTCTTCTATTTACGGTC AAGGAATTATGCAATCAAAACCTGGGCTGGGAAATGCGGGATTAAACACCGCTGCTAGTACTCTTCCGTTGAAAGGATGGCCTTTGACCGGCATTGATCA GATTAGACCAAATTTGGCCTCACAAATGCAAAGGCCTCTTCTACAAGGAAACCAGTTCCAACTCTTGCCACAACAGCAACAGCAGCAGCTCTTGGCACAG GTCCAGGCCCAAGGCAATTTGTCTGGCTCACAAATTTATGGAAACATTGATCCTCAAAGGTTAAGAGGATTGCCTAGAGGTGCTCTGAATCCCAAAGATG GTCAGCCAAATGCAAATGATAATTCTATTGGTTCTCCGATGCAATCAACAGCATCAAAACAAATTAATGGGCCACCGATGCAACAATCATCATCCCAACA ACAAGACCCTTTGCAGCCACAGCAAACTCAGCAGAGTAACCGGAAGAGGAAAGGAGCTTCATCTTCTGGACCTGCTAACAGTACGGGCACGGCAAACACT GTTGGCCCCAATTCTCAGCCATCAACACCATCAACTCATACTCCTGGTGACGGAATTGCTGCCGCTGCCAATATGCAGAATGTCAGCAGCATGTCGAAAG GCATGATGATGTATGGCGCTGATGGAGCTGGAGCTCTTGCATCATCCACCAACCAGCTGGAAGACACAGAGCACTTTGGAGATGTTGGGGATGTTGAATC TTTTCTATCCCATGATGAAGGGGATGGGAGAGATTTGTTTGGAACATTAAAGAGGGAACCTTCTGAGCATGCTGAAGCTTCAAAGGGTTTCTCTTTCCGT GAAGTTGGTTCCATACGTGAAAGCAATAGCAAAGTTGTCTGCTGCCATTTCTCTACAGATGGCAAGTGGTTAGCTAGTGCTGGACATGACAAGAAGGTTG TTCTTTGGAATATGGAAACTCTGCAAACTGAGAGTACTCCAGAAGATCACGCCCACATAATAACTGATGTCAGGTTTAGGCCAAATTCAACCCAGCTGGC GACCTCTTCATTCGACACTACTGTGCGACTCTGGGATGCAGCTGAACCAAGATACCCCCTGCAGTCGTACACAGGGCATACCTCCCATGTACTGTCCCTA GACTTCCATCCAAAGAAGAATGACCTTTTCTGCTCTTGTGATGGTAATAATGAGATTCGGTTCTGGAACATGAGTCAGCAGTTTTCATGTGTCCGCATAT CTAAGGGAGGTACAGCCCAGGTTAGGTTTCAGCCCAGAAGTGGACAACTTCTGGCTGCTGCATCAGAGAATGTTGTGTCTGTGTTTGACGTTGAGACCGA CAGACTGACTCACTCTTTAAAGGGTCATGCGGCAGAGGTGCACTCTGTGTGCTGGGATATAAATGGAGATCTGTTAGCAACAGCGAGTCAGGAATCTGTT AGAGTGTGGTCATTGGCTTCCGGCGAGTGCATTCATGAACTTAGTTCGAGCGGCAATAAGTTCCATTCTTGTGTTTTCCATCCAACCTTTTCAACCCTCT TAGTAATCGGAGGTTACCAGTCGTTGGAGCTGTGGAACATGGCGGAGAATAAGTGCATGACGATTCCAGCTCACGACTGTGTGATATCGGCTCTCGTTCA GTCTCCCGTAACAGGGATGGTAGCTTCTGCAAGCCATGACAAATGTGTGAAGATCTGGAAGTGA
AA sequence Show only first row Show all	>Lus10032614 pacid=23146263 polypeptide=Lus10032614 locus=Lus10032614.g ID=Lus10032614.BGIv1.0 annot-version=v1.0 MAQSNWEADKMLDVYIYDYLVKKKLHTAAKAFMNEGKVSPDPVAIDAPGGCVLAIDSPGGFLFEWWSVFWDIFIARTNEKHSEPAAAYIETQQIKVKEQQ IQMQQLQLMRQAQMQRGGPNMSTLGGPVNAISSEGMLGQSNATALTAKMYEERMKHSNQMDSETSQPLLDPRMALQKSAANHPGQLVQGNSGNASTALQQ MQARTQQSNDIKGEVSISAGQRSLSMDPSSIYGQGIMQSKPGLGNAGLNTAASTLPLKGWPLTGIDQIRPNLASQMQRPLLQGNQFQLLPQQQQQQLLAQ VQAQGNLSGSQIYGNIDPQRLRGLPRGALNPKDGQPNANDNSIGSPMQSTASKQINGPPMQQSSSQQQDPLQPQQTQQSNRKRKGASSSGPANSTGTANT VGPNSQPSTPSTHTPGDGIAAAANMQNVSSMSKGMMMYGADGAGALASSTNQLEDTEHFGDVGDVESFLSHDEGDGRDLFGTLKREPSEHAEASKGFSFR EVGSIRESNSKVVCCHFSTDGKWLASAGHDKKVVLWNMETLQTESTPEDHAHIITDVRFRPNSTQLATSSFDTTVRLWDAAEPRYPLQSYTGHTSHVLSL DFHPKKNDLFCSCDGNNEIRFWNMSQQFSCVRISKGGTAQVRFQPRSGQLLAAASENVVSVFDVETDRLTHSLKGHAAEVHSVCWDINGDLLATASQESV RVWSLASGECIHELSSSGNKFHSCVFHPTFSTLLVIGGYQSLELWNMAENKCMTIPAHDCVISALVQSPVTGMVASASHDKCVKIWK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G32700		MUM1, LUH	MUCILAGE-MODIFIED 1, LEUNIG_ho...		Lus10032614 [exp]	0	1
AT5G26760			unknown protein		Lus10005906 [exp]	4.2	0.8795
AT5G16270		SYN4, ATRAD21.3	ARABIDOPSIS HOMOLOG OF RAD21 3...		Lus10026862 [exp]	7.9	0.8666
AT1G11060			WAPL (Wings apart-like protein...		Lus10001211 [exp]	8.0	0.8697
AT2G42490			Copper amine oxidase family pr...		Lus10026696 [exp]	8.9	0.8305
AT2G36240			pentatricopeptide (PPR) repeat...		Lus10021362 [exp]	9.0	0.8488
AT5G12400			DNA binding;zinc ion binding;D...		Lus10027346 [exp]	9.4	0.8640
AT1G12930			ARM repeat superfamily protein...		Lus10041503 [exp]	12.2	0.8209
AT5G23080		TGH	TOUGH, SWAP (Suppressor-of-Whi...		Lus10009612 [exp]	12.6	0.8474
AT2G36850		CHOR, ATGSL8, A...	CHORUS, glucan synthase-like 8...		Lus10040891 [exp]	13.2	0.8608
AT5G49430			WD40/YVTN repeat-like-containi...		Lus10016881 [exp]	15.9	0.8526

Compare expression of checked genes

Lus10032614 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.