Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G24190 1150 / 0 Protein kinase superfamily protein (.1) AT3G23940 963 / 0 dehydratase family (.1.2) AT1G79600 358 / 4e-108 Protein kinase superfamily protein (.1) AT1G71810 353 / 4e-106 Protein kinase superfamily protein (.1) AT4G31390 298 / 4e-87 Protein kinase superfamily protein (.1.2) AT5G24970 259 / 3e-73 Protein kinase superfamily protein (.1.2) AT2G39190 246 / 5e-68 ATATH8 Protein kinase superfamily protein (.1.2) AT3G07700 178 / 5e-46 Protein kinase superfamily protein (.1.2.3) AT5G64940 165 / 1e-41 ATATH13, ATOSA1 A. THALIANA OXIDATIVE STRESS-RELATED ABC1-LIKE PROTEIN 1, ARABIDOPSIS THALIANA ABC2 HOMOLOG 13, ABC2 homolog 13 (.1.2) AT5G05200 118 / 4e-27 Protein kinase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10043132 [exp] 2586 / 0 AT3G23940 1148 / 0.0 dehydratase family (.1.2) Lus10033370 [exp] 1098 / 0 AT3G23940 1013 / 0.0 dehydratase family (.1.2) Lus10034822 [exp] 1095 / 0 AT3G23940 1009 / 0.0 dehydratase family (.1.2) Lus10035701 [exp] 356 / 1e-106 AT1G79600 1034 / 0.0 Protein kinase superfamily protein (.1) Lus10017924 [exp] 331 / 5e-98 AT1G71810 858 / 0.0 Protein kinase superfamily protein (.1) Lus10020103 [exp] 285 / 6e-82 AT5G24970 920 / 0.0 Protein kinase superfamily protein (.1.2) Lus10020152 [exp] 280 / 3e-80 AT4G31390 1041 / 0.0 Protein kinase superfamily protein (.1.2) Lus10026952 [exp] 275 / 5e-75 AT4G31390 878 / 0.0 Protein kinase superfamily protein (.1.2) Lus10036522 [exp] 247 / 4e-68 AT2G39190 940 / 0.0 Protein kinase superfamily protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G050700 [exp] 1209 / 0 AT3G24190 1233 / 0.0 Protein kinase superfamily protein (.1) Potri.003G176600 [exp] 1018 / 0 AT3G23940 1011 / 0.0 dehydratase family (.1.2) Potri.001G051700 [exp] 1005 / 0 AT3G23940 960 / 0.0 dehydratase family (.1.2) Potri.002G061000 [exp] 360 / 2e-108 AT1G71810 915 / 0.0 Protein kinase superfamily protein (.1) Potri.002G000100 [exp] 333 / 8e-99 AT1G79600 949 / 0.0 Protein kinase superfamily protein (.1) Potri.006G275600 [exp] 299 / 3e-87 AT4G31390 1058 / 0.0 Protein kinase superfamily protein (.1.2) Potri.018G014000 [exp] 263 / 3e-74 AT5G24970 973 / 0.0 Protein kinase superfamily protein (.1.2) Potri.010G221000 [exp] 245 / 1e-67 AT2G39190 965 / 0.0 Protein kinase superfamily protein (.1.2) Potri.014G168600 [exp] 174 / 1e-44 AT3G07700 1038 / 0.0 Protein kinase superfamily protein (.1.2.3) Potri.005G083200 [exp] 172 / 7e-44 AT5G64940 1068 / 0.0 A. THALIANA OXIDATIVE STRESS-RELATED ABC1-LIKE PROTEIN 1, ARABIDOPSIS THALIANA ABC2 HOMOLOG 13, ABC2 homolog 13 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00920 [flax] [poplar] ILVD_EDD Dehydratase family CL0016 [flax] [poplar] PKinase PF03109 [flax] [poplar] ABC1 ABC1 family
Representative CDS sequence Show only first row Show all	>Lus10032616 pacid=23146379 polypeptide=Lus10032616 locus=Lus10032616.g ID=Lus10032616.BGIv1.0 annot-version=v1.0 ATGGCCGCAACGCCACGCCTCGTCTATGGCGGAATCGAACATCCCTCCTTCGTCTCACTCGCTAATTACTCCGGAGCATCTGTCACAATTCCGCCCCGGA GGCGACTACACCGCGTTTTCGCCGTCGCCACTGATCCGAAGCCGACGCAGACCGGAACTACCAAATCGTCCCCGAGTTCGATTAATGGCTCAGCGACTCC GCCGCCGTCTATTGCTCCTGTCAACGGAGCTTCTTCCAAGACTGCGCCGAAAAAGCCCGTCAATGGAGCTTCCACTAGGATGGGGGACGTTTCACAGGAG ATTAAAAGAGTAAGAGCGCAAATGGAAGAGAATGAACAGCTTGCAATCCTCATGCAAGGACTTCGAGGTCAGAATTTAAGGGATGATCAGTTTGCTGATG ATAACATTGAGCTTCGCTTGGTTGAGGTTGATGAAAGCAGTGAGTTTCTTCCCGTGGTATATGATCCTGCCACCATTTCTGCTTACTGGGGAAAACGTCC TCGTGCTGTCACCACGCGAATCGTTCAGTTGCTCTCCGTCGCTGGAGGTTTTCTTTCGCGCATTGCTTGGGATGTGATCAATAAGAAGGTTAACGAGAAT CAAGTGGCTAGAGCTATTGAACTTAGAGAAATTGTGACATCCTTGGGCCCGGCATATATTAAACTTGGACAAGCATTGAGTATTCGTCCTGATATACTCT CACCTGTTGCTATGACTGAGCTGCAAAAGCTTTGTGACAAGGTTCCTTCATTTCCTGATGATATTGCAATGGCTCTTCTAGAGGAAGAGCTTGGTCAACC ATGGCAGAATATCTATTCTGAACTCTCTCCTTCACCAATTGCTGCTGCCTCTTTAGGACAAGTATATAAGGGCCGTCTAAAAGAAACTGGTGAACTTGTA GCTGTTAAAGTTCAGAGGCCATTTGTCCTTGAGACTGTGACAGTTGACCTCTTCGTCATAAGAAACCTGGGTTTGTTCCTGCGAAAATTTCCTCAGGTTG TTGTGCCAAAGACCTACGAGAAATATACGACAAGAAAGGTTCTCACTACACAGTGGATTGAAGGAGAGAAACTGTCCCAAAGCACTGAGAGTGATGTTGG TGATTTAGTAAATGTTGGAGTCATATGCTATTTGAAGCAGTTGCTTGATACTGGATTTTTCCACGCCGATCCACATCCTGGCAATCTGATCCGCACACCC GATGGGAAATTGGCTATACTCGACTTTGGTCTAGTGACGAAATTGACTGATGACCAGAAATATGGGATGATCGAAGCTATTGCCCACCTTATACATAGAG ACTATGATGCAATTGTCAAAGATTTTGTCAAACTGGGCTTTATACCCGAAGGGGTCAATTTGGCGCCCATCTTACCTGTTCTGGCTAAGGTGTTTGATCA GGCGCTTGAAGGTGGTGGTGCCAAGAATTTCAACTTTCAGGAGTTAGCAGCGGATCTTGCACAAATAACCTTTGATTATCCATTTAGGATACCTCCTTAT TTTGCCCTTATAATAAGGGCGATTGGAGTTTTGGAAGGCATAGCTCTGGTGGGAAATTCCGATTTTGCGCTTGTTGATGAGGCATACCCGTACATTGCAC AGAGGCTCCTCACCGATGAATCACCTCGCCTGAAGAGTGCTTTGCGTTACATGATTTATGGGAAATCTGGTGTATTTGATGCCGAAAGATTCATTGATGT CATGCAAGCCTTTGAGTCTTTCATCACTGCAGCTAAAAGTGGAGGCGGAGAGGATATGAATGGGGGTATGGCAGAACTAGGCATCTTGAAAAGCGAAAGC GTCTCCACAAGCTCGTTCTTGACTGCATTCCCACCGACACCGTCCCAAGCTGCTGAGCCAGTTCAAACAAGGGCAGCATTAACCTTTTTGCTTTCCGAGA AGGGGAACTTCTTCCGAGAATTTCTACTTGACGAGATCGTTAAAGGAATTGATGCAGTGACAAGGGAACAGTTGGTTCAAGTACTGGCACTTGTCGGATT CGGGAACGCTCAGCCCGTGTTTAGCATGGTTCCGAGACCATTTAGACCACCAGCAGCTTTTCTCCCCAGCATAACTGATGAAGACAAAGTCGTCCTGAAC AATGTCGAGAAGGTTATCGAGTTCTTAACTGCCGGGAGCTCCCTCTCGAGCACATCTAATCAGGGTCCCAGTATAGATCGGATTGTGCGGGAGCTTCTAC CTGTTCTACCCGGCATATCAGCCAGGGTGCTCCCTGACATCTTCACAAGGCTCTCTTCTAGGGTAACAGCTCGAATAATTCGGGATGTATTCTTGCCGCA CCTCCATTTCTCCTCCCATCAGACCACAATCCGACGCCGCTGCTCCTATTTCATCATGCTATCAACCTTCGTTTCTCCACGCGCCTCGCCGTCACTCCCG CTCTCGCCGCCTGCCACTCGGCACTGTCGAACCAGCTTCCTCCGGGTTGCAGCTCAGTCACAGCATGCCGCCGTCGTCTCGCCTCCGCCGGCAGCCGCTT TGACGGAGAAGTTCAATAAATACAGCTCCCAAGTTACATCCCCAAAGTCCCAGGGTGGGTCCCAGGCCGTCTTGTATGGAGTAGGATTGTCGGACGATGA CTTGACCAAGCCTCAGGTAGGTATCTCATCGGTTTGGTATGAAGGCAACACTTGCAATATGCACTTGCTGAAGCTCTCCGAGGCGGTGAAGCAAGGGGTT CAGGAGGCTGGGATGGTTGGATTCAGGTTTAACACTATCGGTGTCAGCGATGCTATCTCTATGGGGACCAGAGGGATGTGTTACAGCTTGCAGAGTAGGG ACTTGATTGCTGATAGTATCGAGACCGTTATGAGTGCTCAGTGGTATGATGCCAACATCTCCATTCCTGGTTGTGATAAGAATATGCCAGGTACAATTAT TGCGATGGGAAGGCTTAACCGGCCTAGTATCATGGTGTATGGTGGATCTATAAAGCCTGGACATGTCAATGGTCACACCTACGATATAGTATCTGCATTT CAGGTCTATGGAGAGTATCTAAGTGGAGCTGTAACTGATGACCATCGGCGAGAAGTCTTGCAGAATTCGTGTCCTGGCGCTGGTGCCTGTGGTGGAATGT ATACTGCAAATACCATGGCTTCTGCTATTGAAGCCATGGGCATGTCTCTTCCATACAGTTCTTCATTACCCGCTGAAAGCGATTTGAAGCTGGATGAGTG TCGTTTGGCCGGAAAATACCTTCTAGATCTGGTTAAGATGGACTTGAAGCCACGAGATATCATCACTCCTACATCGTTACGCAATGCAATGGTTACGGTC ATGACACTAGGTGGATCTACCAATGCAGTGTTGCACTTGATTGCTATTGCAAGGTCTGTTGGTTTGGACCTAACACTTGATGACTTCCAGAAGGTTAGTG ATGAGATCCCATTCCTGGCTGATCTCAAACCTAGTGGCAAGTATGTCATGGAGGATGTTCACAAGATTGGAGGAACACCTGCAGTGCTTCGCTATCTGTT GGAACTGGGTTTTCTTGATGGAGATTCTTTGACTGTGACTGGGAAGACGTTGGGTGAAAATCTGGCAGACTGCCCCCCTTTGTCAGAGGGTCAGGAAATT ATAAAGCCAGTGGAGAACCCCATCAAGAAGACAGGTCACCTCCAAATATTACGCGGGAATGTTGCACCTGATGGTTCCGTGGCAAAAATTACTGGAAAAG AAGGGCTTTATTTCTCTGGTCCTGCACTTGTGTTTGAAGGAGAGCAATCTATGATGACAGCCATCACTGAGGATCCTATGAGTTTTAAAGGGAAAGTGGT GATCATTAGAGGAGAGGGACCAAAAGGTGGTCCTGGCATGCCAGAAATGCTAACACCAACAAGTGCAATCATGGGAGCTGACCTTGGCAAGGATTGTGCA TTGTTGACCGATGGGAGATTTTCAGGAGGTTCACACGGATTTGTGGTTGGCCACATTTGCCCTGAAGCACAGGAAGGCGGTCCAATTGGTCTGATTAGAG ACGGAGACATAATTACGATTGATGTGAGAGAAAGAAGAATAGATGTTCAGCTTACCGACGAGGAAATGGAACAGAGGAGAAAGAGTTGGACTCCGCCATC ATACAAAGCCACTCGTGGGGTGCTCTACAAGTACATCAAGAACGTTCAACCAGCATCAAAAGGCTGTGTCACAGACGAGTAA
AA sequence Show only first row Show all	>Lus10032616 pacid=23146379 polypeptide=Lus10032616 locus=Lus10032616.g ID=Lus10032616.BGIv1.0 annot-version=v1.0 MAATPRLVYGGIEHPSFVSLANYSGASVTIPPRRRLHRVFAVATDPKPTQTGTTKSSPSSINGSATPPPSIAPVNGASSKTAPKKPVNGASTRMGDVSQE IKRVRAQMEENEQLAILMQGLRGQNLRDDQFADDNIELRLVEVDESSEFLPVVYDPATISAYWGKRPRAVTTRIVQLLSVAGGFLSRIAWDVINKKVNEN QVARAIELREIVTSLGPAYIKLGQALSIRPDILSPVAMTELQKLCDKVPSFPDDIAMALLEEELGQPWQNIYSELSPSPIAAASLGQVYKGRLKETGELV AVKVQRPFVLETVTVDLFVIRNLGLFLRKFPQVVVPKTYEKYTTRKVLTTQWIEGEKLSQSTESDVGDLVNVGVICYLKQLLDTGFFHADPHPGNLIRTP DGKLAILDFGLVTKLTDDQKYGMIEAIAHLIHRDYDAIVKDFVKLGFIPEGVNLAPILPVLAKVFDQALEGGGAKNFNFQELAADLAQITFDYPFRIPPY FALIIRAIGVLEGIALVGNSDFALVDEAYPYIAQRLLTDESPRLKSALRYMIYGKSGVFDAERFIDVMQAFESFITAAKSGGGEDMNGGMAELGILKSES VSTSSFLTAFPPTPSQAAEPVQTRAALTFLLSEKGNFFREFLLDEIVKGIDAVTREQLVQVLALVGFGNAQPVFSMVPRPFRPPAAFLPSITDEDKVVLN NVEKVIEFLTAGSSLSSTSNQGPSIDRIVRELLPVLPGISARVLPDIFTRLSSRVTARIIRDVFLPHLHFSSHQTTIRRRCSYFIMLSTFVSPRASPSLP LSPPATRHCRTSFLRVAAQSQHAAVVSPPPAAALTEKFNKYSSQVTSPKSQGGSQAVLYGVGLSDDDLTKPQVGISSVWYEGNTCNMHLLKLSEAVKQGV QEAGMVGFRFNTIGVSDAISMGTRGMCYSLQSRDLIADSIETVMSAQWYDANISIPGCDKNMPGTIIAMGRLNRPSIMVYGGSIKPGHVNGHTYDIVSAF QVYGEYLSGAVTDDHRREVLQNSCPGAGACGGMYTANTMASAIEAMGMSLPYSSSLPAESDLKLDECRLAGKYLLDLVKMDLKPRDIITPTSLRNAMVTV MTLGGSTNAVLHLIAIARSVGLDLTLDDFQKVSDEIPFLADLKPSGKYVMEDVHKIGGTPAVLRYLLELGFLDGDSLTVTGKTLGENLADCPPLSEGQEI IKPVENPIKKTGHLQILRGNVAPDGSVAKITGKEGLYFSGPALVFEGEQSMMTAITEDPMSFKGKVVIIRGEGPKGGPGMPEMLTPTSAIMGADLGKDCA LLTDGRFSGGSHGFVVGHICPEAQEGGPIGLIRDGDIITIDVRERRIDVQLTDEEMEQRRKSWTPPSYKATRGVLYKYIKNVQPASKGCVTDE

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G23940			dehydratase family (.1.2)		Lus10032616 [exp]	0	1
AT4G25290			DNA photolyases;DNA photolyase...		Lus10031137 [exp]	5.5	0.8325
AT5G62960			unknown protein		Lus10014556 [exp]	5.7	0.7792
AT1G57770			FAD/NAD(P)-binding oxidoreduct...		Lus10035770 [exp]	8.1	0.8255
AT3G58830			haloacid dehalogenase (HAD) su...		Lus10020774 [exp]	8.5	0.7997
AT2G35736			unknown protein		Lus10000732 [exp]	11.0	0.7502
AT4G32770		ATSDX1, VTE1	tocopherol cyclase, chloroplas...		Lus10011696 [exp]	13.9	0.7408
AT1G61900			unknown protein		Lus10020048 [exp]	21.6	0.7699
AT3G19170		ATPREP1, ATZNMP	presequence protease 1 (.1.2)		Lus10014039 [exp]	24.8	0.7751
AT1G11720		ATSS3	starch synthase 3 (.1.2)		Lus10006780 [exp]	26.2	0.6884
AT5G43100			Eukaryotic aspartyl protease f...		Lus10011513 [exp]	29.8	0.6810

Compare expression of checked genes

Lus10032616 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.