Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G15000 246 / 4e-78 cobalt ion binding (.1) AT3G06790 164 / 2e-48 plastid developmental protein DAG, putative (.1.2) AT1G72530 132 / 1e-36 plastid developmental protein DAG, putative (.1.2) AT2G33430 126 / 4e-34 DAL1, DAL differentiation and greening-like 1 (.1) AT2G35240 124 / 2e-33 plastid developmental protein DAG, putative (.1) AT1G11430 123 / 6e-33 plastid developmental protein DAG, putative (.1) AT1G32580 121 / 5e-32 plastid developmental protein DAG, putative (.1) AT1G53260 109 / 8e-28 unknown protein AT4G20020 94 / 8e-21 unknown protein AT5G44780 82 / 2e-16 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10043130 [exp] 414 / 1e-142 AT3G15000 284 / 6e-92 cobalt ion binding (.1) Lus10014696 [exp] 363 / 8e-124 AT3G15000 291 / 1e-95 cobalt ion binding (.1) Lus10032619 [exp] 305 / 8e-103 AT3G15000 223 / 3e-71 cobalt ion binding (.1) Lus10016825 [exp] 166 / 2e-48 AT3G06790 286 / 1e-97 plastid developmental protein DAG, putative (.1.2) Lus10023744 [exp] 124 / 5e-33 AT1G32580 342 / 2e-120 plastid developmental protein DAG, putative (.1) Lus10011789 [exp] 122 / 2e-32 AT1G32580 341 / 5e-120 plastid developmental protein DAG, putative (.1) Lus10007615 [exp] 119 / 3e-31 AT1G11430 314 / 2e-109 plastid developmental protein DAG, putative (.1) Lus10018398 [exp] 116 / 1e-30 AT1G11430 309 / 2e-108 plastid developmental protein DAG, putative (.1) Lus10036589 [exp] 88 / 5e-19 AT4G20020 271 / 1e-87 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G112200 [exp] 247 / 3e-78 AT3G15000 245 / 2e-77 cobalt ion binding (.1) Potri.001G393400 [exp] 242 / 3e-76 AT3G15000 263 / 2e-84 cobalt ion binding (.1) Potri.010G007200 [exp] 161 / 6e-47 AT3G06790 269 / 6e-91 plastid developmental protein DAG, putative (.1.2) Potri.008G169900 [exp] 126 / 9e-34 AT1G32580 284 / 2e-97 plastid developmental protein DAG, putative (.1) Potri.011G032900 [exp] 125 / 1e-33 AT1G11430 261 / 1e-88 plastid developmental protein DAG, putative (.1) Potri.010G068300 [exp] 125 / 2e-33 AT1G32580 314 / 2e-109 plastid developmental protein DAG, putative (.1) Potri.003G015100 [exp] 89 / 6e-19 AT4G20020 239 / 2e-74 unknown protein Potri.010G237200 [exp] 57 / 1e-08 AT3G20930 429 / 5e-150 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Potri.004G218800 [exp] 55 / 5e-08 AT4G20020 182 / 8e-51 unknown protein Potri.008G022200 [exp] 54 / 6e-08 AT3G20930 427 / 3e-149 RNA-binding (RRM/RBD/RNP motifs) family protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10032618 pacid=23146252 polypeptide=Lus10032618 locus=Lus10032618.g ID=Lus10032618.BGIv1.0 annot-version=v1.0 ATGGCAGCTGCTAGAATTTCGATGCTTCTCCGGAGGGCAACAACTACTACTCCCGTCTTCCGTTCCCTACGCCCTCTCTACGTGGCCGCCTCCTCCTCCT CTCACTTCACGAATCTATCTTCCCCCTCTACTGCGGGTCGCTGCTTCGCTACCCGTGCGACTTCGTCCTCGCTTAACGATCCTAGCCCTAACTGGTCAAA TAGGCCGCCGAAAGAGACCATCTTGCTTGATGGATGTGATTTTGAGCACTGGCTGGTGGTGGTGGAGAAACCACAGGATGATCGTACCAGGGATGAGATC ATAGATAGTTACATCAAAACCCTTGCTCAGGTTGTCGGCAGTGAGGAGGAAGCGAGGATGAAAATCTATTCGGTCTCAACCCGTCACTACTTTGCATTTG GAGCTCTTGTTTCTGAGGAGCTTTCTTTAAAGTTGAAAGAGTTGGATCATGTTCGCTGGGTTCTCCCGGACTCATATCTGGATGTGAAGAACAAAGACTA TGGAGGGGAACCATTCATTGATGGGCAAGCTGTTCCGTATGATCCCAAGTATCATGAGGAATGGGTAAGAAATAATGCGAGAGCAAATGAGAGGAACCGA CGCAATGACCGCCCAAGGAACTTCGATCGGTCACGAAACTTCGACCGAAGAAGGGAGAACATGCAAGGTCGGGATTTCCAGAATCCCCAGGCACCTCCGC CTATGGGTAATCAAGCAGTGCAGAATCCTGGATTCCAGCAGAACATGGGCAGCCCAGGTGCGCCACAGCCGCAGCAGCCACAATACCCACCACCACCTCC ACATAACATGGGAGGGCCAGGTGGGCCACCACAACAATACTCTCAAAGAGGACCAGGAGGACCTCCACCACCACCACCAAACCAACAGATGGGAGGTTGG CCACGGAACAATGATCAAGCATATGCCCAACCTCCTCCGCCGCCACACAACCAAATGGGCGGAGCTCCACCAAACGCATATGGAGTGCCACATGGCATCA ATATGGGAAGGATGCCTCCACCGAACATGGGAGGAGGACCAGCTGCACAAGGTAATCCTGGTTGGTCTAATGGCGGGCAGGGAAACTTTCAGAATGGACC TCCACCTCCAAATAACGGAGGCGAGCAGCAAAGCTATCCACAGAATGGCTACCCTCCGAACAGGGATGGAAGCGTGCCTCGTTACTGA
AA sequence Show only first row Show all	>Lus10032618 pacid=23146252 polypeptide=Lus10032618 locus=Lus10032618.g ID=Lus10032618.BGIv1.0 annot-version=v1.0 MAAARISMLLRRATTTTPVFRSLRPLYVAASSSSHFTNLSSPSTAGRCFATRATSSSLNDPSPNWSNRPPKETILLDGCDFEHWLVVVEKPQDDRTRDEI IDSYIKTLAQVVGSEEEARMKIYSVSTRHYFAFGALVSEELSLKLKELDHVRWVLPDSYLDVKNKDYGGEPFIDGQAVPYDPKYHEEWVRNNARANERNR RNDRPRNFDRSRNFDRRRENMQGRDFQNPQAPPPMGNQAVQNPGFQQNMGSPGAPQPQQPQYPPPPPHNMGGPGGPPQQYSQRGPGGPPPPPPNQQMGGW PRNNDQAYAQPPPPPHNQMGGAPPNAYGVPHGINMGRMPPPNMGGGPAAQGNPGWSNGGQGNFQNGPPPPNNGGEQQSYPQNGYPPNRDGSVPRY

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G15000			cobalt ion binding (.1)		Lus10032618 [exp]	0	1
AT4G20020			unknown protein		Lus10035806 [exp]	1.0	0.9227
AT1G02370			Tetratricopeptide repeat (TPR)...		Lus10004173 [exp]	3.2	0.9171
AT3G49910			Translation protein SH3-like f...		Lus10028537 [exp]	6.5	0.9109
AT1G80270		PPR596	PENTATRICOPEPTIDE REPEAT 596 (...		Lus10012112 [exp]	6.6	0.8907
AT5G64670			Ribosomal protein L18e/L15 sup...		Lus10032390 [exp]	6.9	0.8853
AT1G70600			Ribosomal protein L18e/L15 sup...		Lus10006207 [exp]	7.5	0.9000
AT3G08820			Pentatricopeptide repeat (PPR)...		Lus10029436 [exp]	7.7	0.8857
AT5G22790		RER1	reticulata-related 1 (.1)		Lus10043364 [exp]	8.4	0.8280
AT1G20300			Pentatricopeptide repeat (PPR)...		Lus10037533 [exp]	8.4	0.8873
AT1G23290		RPL27A, RPL27AB	RIBOSOMAL PROTEIN L27A, Riboso...		Lus10016336 [exp]	10.2	0.9052

Compare expression of checked genes

Lus10032618 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.