Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G15000 202 / 5e-63 cobalt ion binding (.1) AT3G06790 154 / 3e-46 plastid developmental protein DAG, putative (.1.2) AT2G33430 117 / 7e-32 DAL1, DAL differentiation and greening-like 1 (.1) AT1G32580 114 / 6e-31 plastid developmental protein DAG, putative (.1) AT2G35240 114 / 8e-31 plastid developmental protein DAG, putative (.1) AT1G11430 106 / 1e-27 plastid developmental protein DAG, putative (.1) AT1G72530 97 / 2e-24 plastid developmental protein DAG, putative (.1.2) AT4G20020 80 / 4e-17 unknown protein AT5G44780 79 / 2e-16 unknown protein AT1G53260 66 / 1e-12 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10032618 [exp] 303 / 2e-102 AT3G15000 301 / 2e-99 cobalt ion binding (.1) Lus10043130 [exp] 298 / 2e-99 AT3G15000 284 / 6e-92 cobalt ion binding (.1) Lus10014696 [exp] 285 / 3e-95 AT3G15000 291 / 1e-95 cobalt ion binding (.1) Lus10016825 [exp] 155 / 4e-46 AT3G06790 286 / 1e-97 plastid developmental protein DAG, putative (.1.2) Lus10011789 [exp] 114 / 2e-30 AT1G32580 341 / 5e-120 plastid developmental protein DAG, putative (.1) Lus10023744 [exp] 113 / 3e-30 AT1G32580 342 / 2e-120 plastid developmental protein DAG, putative (.1) Lus10007615 [exp] 107 / 7e-28 AT1G11430 314 / 2e-109 plastid developmental protein DAG, putative (.1) Lus10018398 [exp] 103 / 3e-27 AT1G11430 309 / 2e-108 plastid developmental protein DAG, putative (.1) Lus10036589 [exp] 80 / 5e-17 AT4G20020 271 / 1e-87 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G112200 [exp] 194 / 1e-59 AT3G15000 245 / 2e-77 cobalt ion binding (.1) Potri.001G393400 [exp] 193 / 2e-59 AT3G15000 263 / 2e-84 cobalt ion binding (.1) Potri.010G007200 [exp] 154 / 8e-46 AT3G06790 269 / 6e-91 plastid developmental protein DAG, putative (.1.2) Potri.010G068300 [exp] 117 / 9e-32 AT1G32580 314 / 2e-109 plastid developmental protein DAG, putative (.1) Potri.008G169900 [exp] 117 / 1e-31 AT1G32580 284 / 2e-97 plastid developmental protein DAG, putative (.1) Potri.011G032900 [exp] 110 / 3e-29 AT1G11430 261 / 1e-88 plastid developmental protein DAG, putative (.1) Potri.003G015100 [exp] 77 / 5e-16 AT4G20020 239 / 2e-74 unknown protein Potri.010G237200 [exp] 56 / 1e-08 AT3G20930 429 / 5e-150 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Potri.008G022200 [exp] 55 / 2e-08 AT3G20930 427 / 3e-149 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Potri.004G218800 [exp] 48 / 4e-06 AT4G20020 182 / 8e-51 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10032619 pacid=23146358 polypeptide=Lus10032619 locus=Lus10032619.g ID=Lus10032619.BGIv1.0 annot-version=v1.0 ATGGGCTTTGTGGTATTATTGGGCCAGGGTTTGGAAGGCGTACCACTGCACCAGACGCCGGCTAGGTATCTGATAAGTTCTTTGCTTCCTGTTTGCCTCT TCCAAGGCAATTTTCGTTTCCGTTGGATGAGCTCTGCCGGAATCCATATTAAAGGCCCTAAAACCCTAGCTTCACCGACGAATAGGATTTTTGGCGACTC ACACTCCACCATGGCCGCTGCTAGAGTTTCGATGCTTCTCCGGAAGGCAACAACTACTACTCCCGTCTTCCGCTCCCTACGCCCACTCTACGCCGCCTCC TCTCACTTCACGAATCTATCTTCCCCCTCTACTGCGGGTCGCTGCTTCGCTACCCGTGCGACTTCGTCCTCGCTTAACGATCCTAGCCCTAACTGGTCAA ATAGGCCCCCGAAAGAGACCATCTTGCTTGATGGATGTGATTTTGAGCACTGGCTGGTGGTGGTGGAGAAACCACAGGATAATCTTACCAGGGATGAGAT CATAGATGGTTACATCAAAACCCTTGCTCAGATTGTCGGCAGTGAGGAGGAAGCTCGGATGAAAATCTATTCGGTCTCAACCCGTCACTACTTTGCATTT GGAGCTCTTGTTTCTGAGGAGCTTTCTTTAAAGTTGAAAGAGTTGGATCATGTTCGCTGGGTTCTCCCGGACTCATATCTGGATGTGAAGAACAAAGACT ATGGGGGTATTCTAGTTTCCCTTATGTTCTTATGTTTTCCGTTGCTTTTTTGCTATGTGGTTTGA
AA sequence Show only first row Show all	>Lus10032619 pacid=23146358 polypeptide=Lus10032619 locus=Lus10032619.g ID=Lus10032619.BGIv1.0 annot-version=v1.0 MGFVVLLGQGLEGVPLHQTPARYLISSLLPVCLFQGNFRFRWMSSAGIHIKGPKTLASPTNRIFGDSHSTMAAARVSMLLRKATTTTPVFRSLRPLYAAS SHFTNLSSPSTAGRCFATRATSSSLNDPSPNWSNRPPKETILLDGCDFEHWLVVVEKPQDNLTRDEIIDGYIKTLAQIVGSEEEARMKIYSVSTRHYFAF GALVSEELSLKLKELDHVRWVLPDSYLDVKNKDYGGILVSLMFLCFPLLFCYVV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G15000			cobalt ion binding (.1)		Lus10032619 [exp]	0	1
AT5G44500			Small nuclear ribonucleoprotei...		Lus10038421 [exp]	3.0	0.9094
AT5G67630			P-loop containing nucleoside t...		Lus10011551 [exp]	3.2	0.8893
AT1G21880		LYM1	lysm domain GPI-anchored prote...		Lus10025643 [exp]	4.9	0.8857
AT3G18600			P-loop containing nucleoside t...		Lus10027240 [exp]	8.7	0.8793
AT4G34880			Amidase family protein (.1)		Lus10027853 [exp]	8.7	0.8671
AT5G67630			P-loop containing nucleoside t...		Lus10019267 [exp]	9.4	0.8766
AT5G43970		ATTOM22-V, TOM2...	TRANSLOCASE OUTER MITOCHONDRIA...		Lus10022876 [exp]	10.1	0.8776
AT3G25150			Nuclear transport factor 2 (NT...		Lus10003144 [exp]	10.4	0.8689
AT5G56280		CSN6A	COP9 signalosome subunit 6A (....		Lus10027082 [exp]	11.0	0.8546
AT3G22330		ATRH53, PMH2	putative mitochondrial RNA hel...		Lus10031012 [exp]	11.8	0.8673

Compare expression of checked genes

Lus10032619 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.