Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G13430 763 / 0 ATLEUC1, IIL1 isopropyl malate isomerase large subunit 1 (.1) AT4G26970 81 / 1e-15 ACO2 aconitase 2 (.1) AT2G05710 79 / 4e-15 ACO3 aconitase 3 (.1) AT4G35830 74 / 1e-13 ACO1 aconitase 1 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10043129 [exp] 921 / 0 AT4G13430 852 / 0.0 isopropyl malate isomerase large subunit 1 (.1) Lus10014463 [exp] 768 / 0 AT4G13430 702 / 0.0 isopropyl malate isomerase large subunit 1 (.1) Lus10021533 [exp] 86 / 4e-17 AT2G05710 1523 / 0.0 aconitase 3 (.1) Lus10027165 [exp] 84 / 1e-16 AT2G05710 1706 / 0.0 aconitase 3 (.1) Lus10039678 [exp] 83 / 2e-16 AT2G05710 1704 / 0.0 aconitase 3 (.1) Lus10040070 [exp] 82 / 4e-16 AT2G05710 1620 / 0.0 aconitase 3 (.1) Lus10031561 [exp] 82 / 5e-16 AT2G05710 1674 / 0.0 aconitase 3 (.1) Lus10015116 [exp] 81 / 2e-15 AT2G05710 1707 / 0.0 aconitase 3 (.1) Lus10041858 [exp] 75 / 1e-13 AT4G35830 1695 / 0.0 aconitase 1 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G065100 [exp] 819 / 0 AT4G13430 850 / 0.0 isopropyl malate isomerase large subunit 1 (.1) Potri.008G172500 [exp] 707 / 0 AT4G13430 644 / 0.0 isopropyl malate isomerase large subunit 1 (.1) Potri.014G153400 [exp] 82 / 7e-16 AT2G05710 1695 / 0.0 aconitase 3 (.1) Potri.005G108100 [exp] 78 / 1e-14 AT4G35830 1668 / 0.0 aconitase 1 (.1.2) Potri.002G229200 [exp] 78 / 1e-14 AT2G05710 1674 / 0.0 aconitase 3 (.1) Potri.007G060900 [exp] 76 / 3e-14 AT4G35830 1658 / 0.0 aconitase 1 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00330 [flax] [poplar] Aconitase Aconitase family (aconitate hydratase)
Representative CDS sequence Show only first row Show all	>Lus10032620 pacid=23146242 polypeptide=Lus10032620 locus=Lus10032620.g ID=Lus10032620.BGIv1.0 annot-version=v1.0 ATGGCTAATTACCAAAAAGTTGCTATTAGCCCTTCCATTTTTGTTGGGTCGCTCCCTTCTCATCCATTTTTCTGCATATTTAGCCCATTTAGTCTAATCA GGACAGGGCTGGGCAAAGCCACAGATTTCCCATTTTATTTCAACCCAAGGCGTCAGTTGGTCGGAGTTGGGTTGCAACTTGCACAGCTTTCTGCCGCCGC CTACTCCACCGTCTTTTCTCCAAGGTTCGATCATTCCCGTTCAGCCATGACTTCCTCCACCTTCACCTCTCCTTCCACATCCTTCATCTCCAACAAGAAT GAACTGGCTCGCTCAGCGCTCTCCTCGATACCGTCTTCTTTCTCGGTACCTAAATCCAGGAGATCAATCTCGAATAAGATCGTTTCAGTTATGGCGCCAC AGCAGTCGCAGCGCAGTCCCGCTACTACTGGTTCCGTGAAGACTGCGATGACGATGACTGAGAAAATCTTGGCTAGGGCTTCACAGAAGCCGCAGTTGAG CCCTGGTGAAAATGTTTGGGTGGACATTGATATCTTGATGACTCATGATGTTTGTGGTCCTGGTTCTATTGGTATCTTCAAGAAAGAGTTTGGGCATAAT GCTAAGGTTTGGGACCGTGAAAAGATTGTCATCATACCTGATCACTATATATTTACCAATGACGAACGTGCAAATCGTAACGTGGATATTTTGAGAGACT TCTGTGCGGAGCAAGACATTAAGTACTTCTATGACATTCAGGACCGGGGTAATTTTAAGGCTAACCCTGATTACAAAGGTGTGTGTCATGTGGCACTTGC ACAAGAGGGTCACTGCAGACCTGGCGAGGTCTTGCTAGGTACAGACTCACACACCTGTACAGCTGGAGCTTTTGGCCAATTTGCCACTGGGATCGGTAAC ACTGATGCAGGTTTTGTATTAGGCACTGGGAAGCTCTTGCTTAAGGTTCCCCCAACGTTGCGATTTGTAATGGATGGTGAAATGCCTGATTATATACTTG CAAAGGATCTGATTTTGCAAATTATTGGTGAAATATCTGTGGCTGGTGCAACATATAAATCAATGGAGTTCGTTGGCACAACTGTTGAAAGTTTAACTAT GGAAGAGCGTATGACCTTATGTAACATGGTTGTTGAAGCTGGAGGAAAGAATGGTGTTGTGCCTGCTGACAGTACTACTTTCAAGTATCTTGAGGATAAG ACATCACTTCCGTATGAACCGGTTTACAGCGACCAGCAAGCAAGGTATCTTTCAGAGTATAGATTTGACATCTCAAAGTTGGAACCAATAGTTGCCAAGC CCCATTCTCCTGATAACAGAGCTTTGGCAAGAGAGTGCAAAGATGTCAAGATTGACAGGGTCTATATTGGATCTTGTACTGGTGGGAAAACTGAGGATTT CATGGCTGCAGCCAAAGTTTTCCTAGCTTCAGGATACAAAAAGGTCAAAGTACCCACCTTCCTTGTGCCTGCTACACAGAAGGTGTGGATGGACGTTTAC AGTCTCCCTGTACCCGGAGCTGGTGGTAAGACGTGCTCTCAAATTTTCGAGGAAGTCGGTTGCGACACACCTGCAAGTCCGAGTTGTGGCGCTTGTTTGG GAGGCCCTAAAGATACTTATGCACGCATGAACGAGCCAAAGGCAAGTGGATGCTTTCTACTCCCTTATTTCCCTTCAGAACTTCAATCCTAA
AA sequence Show only first row Show all	>Lus10032620 pacid=23146242 polypeptide=Lus10032620 locus=Lus10032620.g ID=Lus10032620.BGIv1.0 annot-version=v1.0 MANYQKVAISPSIFVGSLPSHPFFCIFSPFSLIRTGLGKATDFPFYFNPRRQLVGVGLQLAQLSAAAYSTVFSPRFDHSRSAMTSSTFTSPSTSFISNKN ELARSALSSIPSSFSVPKSRRSISNKIVSVMAPQQSQRSPATTGSVKTAMTMTEKILARASQKPQLSPGENVWVDIDILMTHDVCGPGSIGIFKKEFGHN AKVWDREKIVIIPDHYIFTNDERANRNVDILRDFCAEQDIKYFYDIQDRGNFKANPDYKGVCHVALAQEGHCRPGEVLLGTDSHTCTAGAFGQFATGIGN TDAGFVLGTGKLLLKVPPTLRFVMDGEMPDYILAKDLILQIIGEISVAGATYKSMEFVGTTVESLTMEERMTLCNMVVEAGGKNGVVPADSTTFKYLEDK TSLPYEPVYSDQQARYLSEYRFDISKLEPIVAKPHSPDNRALARECKDVKIDRVYIGSCTGGKTEDFMAAAKVFLASGYKKVKVPTFLVPATQKVWMDVY SLPVPGAGGKTCSQIFEEVGCDTPASPSCGACLGGPKDTYARMNEPKASGCFLLPYFPSELQS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G13430		ATLEUC1, IIL1	isopropyl malate isomerase lar...		Lus10032620 [exp]	0	1
AT3G62120			Class II aaRS and biotin synth...		Lus10016281 [exp]	3.5	0.9491
AT3G03420			Ku70-binding family protein (....		Lus10014579 [exp]	8.1	0.9228
AT5G51830			pfkB-like carbohydrate kinase ...		Lus10027401 [exp]	8.5	0.9401
AT3G02090		MPPBETA	Insulinase (Peptidase family M...		Lus10004938 [exp]	8.5	0.9410
AT1G72330		ALAAT2	alanine aminotransferase 2 (.1...		Lus10003935 [exp]	9.4	0.9421
AT1G16300		GAPCP-2	glyceraldehyde-3-phosphate deh...		Lus10000872 [exp]	12.6	0.9400
AT1G70770			Protein of unknown function DU...		Lus10001593 [exp]	13.0	0.9380
AT5G36880		ACS	acetyl-CoA synthetase (.1.2)		Lus10041499 [exp]	14.1	0.9295
AT3G12120		FAD2	fatty acid desaturase 2 (.1.2)		Lus10021051 [exp]	14.7	0.9377
AT5G14040		PHT3;1	phosphate transporter 3;1 (.1)		Lus10041519 [exp]	15.9	0.9365

Compare expression of checked genes

Lus10032620 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.