Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G06970 74 / 8e-16 ATCHX14, CHX14 cation/hydrogen exchanger 14 (.1) AT3G53720 74 / 1e-15 ATCHX20 cation/H+ exchanger 20, cation/H+ exchanger 20, cation/H+ exchanger 20 (.1) AT2G30240 73 / 2e-15 ATCHX13 CATION/H+ EXCHANGER 13, Cation/hydrogen exchanger family protein (.1) AT3G44900 73 / 3e-15 ATCHX4 cation/H+ exchanger 4, cation/H+ exchanger 4, cation/H+ exchanger 4 (.1) AT1G08140 72 / 5e-15 ATCHX6a cation/H+ exchanger 6A, cation/H+ exchanger 6A, cation/H+ exchanger 6A (.1) AT1G08150 71 / 2e-14 ATCHX5 CATION/H+ EXCHANGER 5, Cation/hydrogen exchanger family protein (.1) AT5G22900 67 / 4e-13 ATCHX3 cation/H+ exchanger 3, ARABIDOPSIS THALIANA CATION/H+ EXCHANGER 3, cation/H+ exchanger 3 (.1) AT2G28180 66 / 7e-13 CHX08, ATCHX8 CATION/H+ EXCHANGER 8, Cation/hydrogen exchanger family protein (.1) AT3G44930 64 / 2e-12 ATCHX10 cation/H+ exchanger 10, cation/H+ exchanger 10, cation/H+ exchanger 10 (.1) AT5G41610 64 / 2e-12 ATCHX18 cation/H+ exchanger 18, ARABIDOPSIS THALIANA CATION/H+ EXCHANGER 18, cation/H+ exchanger 18 (.1), cation/H+ exchanger 18 (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10043128 [exp] 241 / 2e-75 AT3G44900 540 / 0.0 cation/H+ exchanger 4, cation/H+ exchanger 4, cation/H+ exchanger 4 (.1) Lus10025325 [exp] 76 / 6e-17 AT3G53720 324 / 5e-106 cation/H+ exchanger 20, cation/H+ exchanger 20, cation/H+ exchanger 20 (.1) Lus10037374 [exp] 77 / 2e-16 AT3G44900 502 / 8e-167 cation/H+ exchanger 4, cation/H+ exchanger 4, cation/H+ exchanger 4 (.1) Lus10017540 [exp] 76 / 3e-16 AT5G41610 1013 / 0.0 cation/H+ exchanger 18, ARABIDOPSIS THALIANA CATION/H+ EXCHANGER 18, cation/H+ exchanger 18 (.1), cation/H+ exchanger 18 (.2) Lus10025322 [exp] 73 / 3e-15 AT3G53720 793 / 0.0 cation/H+ exchanger 20, cation/H+ exchanger 20, cation/H+ exchanger 20 (.1) Lus10041344 [exp] 72 / 5e-15 AT5G22900 511 / 4e-170 cation/H+ exchanger 3, ARABIDOPSIS THALIANA CATION/H+ EXCHANGER 3, cation/H+ exchanger 3 (.1) Lus10032332 [exp] 71 / 2e-14 AT4G23700 1030 / 0.0 cation/H+ exchanger 17, cation/H+ exchanger 17, cation/H+ exchanger 17 (.1) Lus10017541 [exp] 71 / 2e-14 AT5G41610 800 / 0.0 cation/H+ exchanger 18, ARABIDOPSIS THALIANA CATION/H+ EXCHANGER 18, cation/H+ exchanger 18 (.1), cation/H+ exchanger 18 (.2) Lus10021413 [exp] 67 / 4e-13 AT2G13620 399 / 7e-127 CATION/H+ EXCHANGER 15, cation/hydrogen exchanger 15 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G098600 [exp] 94 / 2e-22 AT3G44900 388 / 6e-123 cation/H+ exchanger 4, cation/H+ exchanger 4, cation/H+ exchanger 4 (.1) Potri.006G176800 [exp] 88 / 1e-20 AT5G22900 371 / 1e-117 cation/H+ exchanger 3, ARABIDOPSIS THALIANA CATION/H+ EXCHANGER 3, cation/H+ exchanger 3 (.1) Potri.006G176400 [exp] 81 / 4e-18 AT3G44900 442 / 8e-144 cation/H+ exchanger 4, cation/H+ exchanger 4, cation/H+ exchanger 4 (.1) Potri.006G054700 [exp] 79 / 3e-17 AT3G53720 982 / 0.0 cation/H+ exchanger 20, cation/H+ exchanger 20, cation/H+ exchanger 20 (.1) Potri.018G098300 [exp] 73 / 2e-15 AT5G22900 470 / 3e-154 cation/H+ exchanger 3, ARABIDOPSIS THALIANA CATION/H+ EXCHANGER 3, cation/H+ exchanger 3 (.1) Potri.001G096320 [exp] 73 / 2e-15 AT5G41610 1069 / 0.0 cation/H+ exchanger 18, ARABIDOPSIS THALIANA CATION/H+ EXCHANGER 18, cation/H+ exchanger 18 (.1), cation/H+ exchanger 18 (.2) Potri.007G105200 [exp] 73 / 4e-15 AT2G13620 1112 / 0.0 CATION/H+ EXCHANGER 15, cation/hydrogen exchanger 15 (.1) Potri.013G142301 [exp] 73 / 4e-15 AT5G41610 1067 / 0.0 cation/H+ exchanger 18, ARABIDOPSIS THALIANA CATION/H+ EXCHANGER 18, cation/H+ exchanger 18 (.1), cation/H+ exchanger 18 (.2) Potri.019G123700 [exp] 69 / 5e-14 AT2G13620 536 / 4e-179 CATION/H+ EXCHANGER 15, cation/hydrogen exchanger 15 (.1) Potri.010G183000 [exp] 65 / 2e-12 AT2G13620 474 / 8e-156 CATION/H+ EXCHANGER 15, cation/hydrogen exchanger 15 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0064 [flax] [poplar] CPA_AT PF00999 [flax] [poplar] Na_H_Exchanger Sodium/hydrogen exchanger family
Representative CDS sequence Show only first row Show all	>Lus10032621 pacid=23146276 polypeptide=Lus10032621 locus=Lus10032621.g ID=Lus10032621.BGIv1.0 annot-version=v1.0 ATGTTTGAAATAGTGTGCCTGTTTTGTTCTGGTGTTGTCACACATTTGTTCGGACAGTACGGTCCATTCATCCTAGGATTGTCCATACCGGAAGGGCCTC CACTTGCAACTGCTCTAACCGAGAGACTCGACTGCATATCATCGTACGCACTCCAGCCAATTTTCGTAGCCATTGCTGGGATGAGAACCGATTTCGGGAG TCTGAAAGGGCACACAAAGCTTATCATCATAGACGTTCTGCTCATCTCCGCAACGTTAGCCTCCAAAATACTGTCGTGCTTCGTGGTTTCGGTGCAAGGT GGGATGCTGGTAAAGGACTCCCTCGCATTCTCGCTTCTCATGAGCGCCAAAGGTGTCGTCGAGTTGGCTACCTATAGCTATTTGAGAGATGCCAGGATGA TCAGCGAAAGGACATTCAAGGTGTTAAACACTACTCACCACGATCGTCGTCCCGGTCATGGTGAGGCGACTCCACGATTCGTCGAGGAAGTACGCCAACT AACAGAGGAGGAACATCTCGTTTCTAAGACCTAA
AA sequence Show only first row Show all	>Lus10032621 pacid=23146276 polypeptide=Lus10032621 locus=Lus10032621.g ID=Lus10032621.BGIv1.0 annot-version=v1.0 MFEIVCLFCSGVVTHLFGQYGPFILGLSIPEGPPLATALTERLDCISSYALQPIFVAIAGMRTDFGSLKGHTKLIIIDVLLISATLASKILSCFVVSVQG GMLVKDSLAFSLLMSAKGVVELATYSYLRDARMISERTFKVLNTTHHDRRPGHGEATPRFVEEVRQLTEEEHLVSKT

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G44900		ATCHX4	cation/H+ exchanger 4, cation/...		Lus10032621 [exp]	0	1
					Lus10039496 [exp]	3.9	0.9570
					Lus10009927 [exp]	5.3	0.9550
AT1G55570		SKS12	SKU5 similar 12 (.1)		Lus10021864 [exp]	5.5	0.9434
AT1G14830		DRP1C, ADL5, AD...	DYNAMIN RELATED PROTEIN 1C, AR...		Lus10043352 [exp]	5.9	0.9439
					Lus10034352 [exp]	6.5	0.9527
					Lus10027893 [exp]	7.5	0.9244
AT4G26590		ATOPT5	ARABIDOPSIS THALIANA OLIGOPEPT...		Lus10043161 [exp]	7.7	0.9013
AT2G39440			unknown protein		Lus10040607 [exp]	8.0	0.9395
					Lus10018837 [exp]	8.2	0.9444
AT4G36470			S-adenosyl-L-methionine-depend...		Lus10028330 [exp]	8.4	0.9433

Compare expression of checked genes

Lus10032621 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.