Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G44900 174 / 7e-49 ATCHX4 cation/H+ exchanger 4, cation/H+ exchanger 4, cation/H+ exchanger 4 (.1) AT5G22900 170 / 3e-47 ATCHX3 cation/H+ exchanger 3, ARABIDOPSIS THALIANA CATION/H+ EXCHANGER 3, cation/H+ exchanger 3 (.1) AT1G08150 162 / 2e-44 ATCHX5 CATION/H+ EXCHANGER 5, Cation/hydrogen exchanger family protein (.1) AT2G28180 157 / 9e-43 CHX08, ATCHX8 CATION/H+ EXCHANGER 8, Cation/hydrogen exchanger family protein (.1) AT1G08140 152 / 5e-41 ATCHX6a cation/H+ exchanger 6A, cation/H+ exchanger 6A, cation/H+ exchanger 6A (.1) AT2G28170 144 / 2e-38 ATCHX7 CATION/H+ EXCHANGER 7, Cation/hydrogen exchanger family protein (.1) AT1G08135 142 / 2e-37 ATCHX6B, CHX6B cation/H+ exchanger 6B, cation/H+ exchanger 6B (.1) AT3G44920 127 / 2e-32 ATCHX11 cation/H+ exchanger 11, cation/H+ exchanger 11 (.1) AT2G13620 127 / 3e-32 ATCHX15 CATION/H+ EXCHANGER 15, cation/hydrogen exchanger 15 (.1) AT3G44930 126 / 4e-32 ATCHX10 cation/H+ exchanger 10, cation/H+ exchanger 10, cation/H+ exchanger 10 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10043128 [exp] 463 / 9e-159 AT3G44900 540 / 0.0 cation/H+ exchanger 4, cation/H+ exchanger 4, cation/H+ exchanger 4 (.1) Lus10041344 [exp] 136 / 2e-35 AT5G22900 511 / 4e-170 cation/H+ exchanger 3, ARABIDOPSIS THALIANA CATION/H+ EXCHANGER 3, cation/H+ exchanger 3 (.1) Lus10037374 [exp] 133 / 2e-34 AT3G44900 502 / 8e-167 cation/H+ exchanger 4, cation/H+ exchanger 4, cation/H+ exchanger 4 (.1) Lus10021412 [exp] 126 / 4e-32 AT5G22900 422 / 5e-136 cation/H+ exchanger 3, ARABIDOPSIS THALIANA CATION/H+ EXCHANGER 3, cation/H+ exchanger 3 (.1) Lus10016153 [exp] 124 / 3e-31 AT3G44900 434 / 2e-140 cation/H+ exchanger 4, cation/H+ exchanger 4, cation/H+ exchanger 4 (.1) Lus10021413 [exp] 122 / 1e-30 AT2G13620 399 / 7e-127 CATION/H+ EXCHANGER 15, cation/hydrogen exchanger 15 (.1) Lus10013423 [exp] 121 / 2e-30 AT3G44900 375 / 2e-117 cation/H+ exchanger 4, cation/H+ exchanger 4, cation/H+ exchanger 4 (.1) Lus10040963 [exp] 116 / 1e-28 AT3G44900 376 / 2e-117 cation/H+ exchanger 4, cation/H+ exchanger 4, cation/H+ exchanger 4 (.1) Lus10000161 [exp] 115 / 3e-28 AT5G22900 320 / 6e-99 cation/H+ exchanger 3, ARABIDOPSIS THALIANA CATION/H+ EXCHANGER 3, cation/H+ exchanger 3 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G176400 [exp] 149 / 6e-40 AT3G44900 442 / 8e-144 cation/H+ exchanger 4, cation/H+ exchanger 4, cation/H+ exchanger 4 (.1) Potri.018G098300 [exp] 143 / 6e-38 AT5G22900 470 / 3e-154 cation/H+ exchanger 3, ARABIDOPSIS THALIANA CATION/H+ EXCHANGER 3, cation/H+ exchanger 3 (.1) Potri.010G182900 [exp] 131 / 6e-34 AT3G44900 365 / 1e-114 cation/H+ exchanger 4, cation/H+ exchanger 4, cation/H+ exchanger 4 (.1) Potri.007G105200 [exp] 130 / 2e-33 AT2G13620 1112 / 0.0 CATION/H+ EXCHANGER 15, cation/hydrogen exchanger 15 (.1) Potri.010G171200 [exp] 127 / 2e-32 AT2G13620 360 / 4e-112 CATION/H+ EXCHANGER 15, cation/hydrogen exchanger 15 (.1) Potri.018G098600 [exp] 125 / 1e-31 AT3G44900 388 / 6e-123 cation/H+ exchanger 4, cation/H+ exchanger 4, cation/H+ exchanger 4 (.1) Potri.007G099000 [exp] 123 / 4e-31 AT5G22900 385 / 1e-121 cation/H+ exchanger 3, ARABIDOPSIS THALIANA CATION/H+ EXCHANGER 3, cation/H+ exchanger 3 (.1) Potri.006G176800 [exp] 118 / 2e-29 AT5G22900 371 / 1e-117 cation/H+ exchanger 3, ARABIDOPSIS THALIANA CATION/H+ EXCHANGER 3, cation/H+ exchanger 3 (.1) Potri.019G123700 [exp] 115 / 2e-28 AT2G13620 536 / 4e-179 CATION/H+ EXCHANGER 15, cation/hydrogen exchanger 15 (.1) Potri.016G127800 [exp] 111 / 7e-27 AT5G01680 436 / 6e-142 cation/H+ exchanger 26, ARABIDOPSIS THALIANA CATION/HYDROGEN EXCHANGER 26, cation/H+ exchanger 26 (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10032622 pacid=23146433 polypeptide=Lus10032622 locus=Lus10032622.g ID=Lus10032622.BGIv1.0 annot-version=v1.0 ATGCTTATAAGCATCCACAGCCCCGATAAGATACAAATGATCAATTTTATCGAAGCTGTCTCGCCCAAGCAGGAGAAGCCGGTTTCCCTCTACGTTCTTC ATCTCATCAAATTGACCGGCAGAGCATTGCCCGTCTTCATCTCCCACAAAATCCATAACAAATTGTGCAAATCGTTTTCCTACTACGACAACGTCGCCGT GTTATTCGATCGGTACAGGCAGCGGATCCATCAGGAGGAAGATTGGCGGAGGCGGCGGCGGATTAACGATCTCAGCCTTCACCGCACATTGGCGTTAGAC AAGAGAACTTCGCTCATAATCCTCACGTTCCATCAAACAAGGTCCTCGAAGGGGCGGGTTTTGACGGACGACAAAATCCTAAGAGCTTTTAATCGAAGCG TTCTCGACAGAGCTCCTTGCTCCGTCGGCATCCTCGTCGATCGCCGCCGCGTGATAAAACAAACACAAAAACTACCGTCGGATCACCAGACTGTAGCTGG TGTTTTCATCGGAGGAGACGATGACAGGGAGGCACTGACGCTGGCGAAACGGATGGTCCGAGGAGGAGGGTCATCCTCTGGCGTTAAGTTAACGGTGATC CGGTTGGTGGCAAAGGACGGTGACGGTGGGTTGACGGAGTGGGAGAAGATTCTGGATTTCGAGGCGTTGAAGGACTTGATGAAGGGGAAGCGTGGTGAAA CCGACGACGTCGGTGGGGGCGATGAGATGTTGAATGTTGAAGGTTGTTACGTGGAAGAGGCGGTGAAAGGCGGGCAGGAGATGTCGCGGGTGATGAAGAG AGTGGCGACCGGTTATGAGCTCATAATCGTGGGCAGAAGAAACGGCGTGGTGTCGCCGCTATCAGAAGAGGAGAAGAAGAGCATGAGCTGTGCACCATCC AGAGAAGGAAATCCATTACCGTTGGAGGACGATGCACAGAGTGACCAGTTTGCAACAGAGTGA
AA sequence Show only first row Show all	>Lus10032622 pacid=23146433 polypeptide=Lus10032622 locus=Lus10032622.g ID=Lus10032622.BGIv1.0 annot-version=v1.0 MLISIHSPDKIQMINFIEAVSPKQEKPVSLYVLHLIKLTGRALPVFISHKIHNKLCKSFSYYDNVAVLFDRYRQRIHQEEDWRRRRRINDLSLHRTLALD KRTSLIILTFHQTRSSKGRVLTDDKILRAFNRSVLDRAPCSVGILVDRRRVIKQTQKLPSDHQTVAGVFIGGDDDREALTLAKRMVRGGGSSSGVKLTVI RLVAKDGDGGLTEWEKILDFEALKDLMKGKRGETDDVGGGDEMLNVEGCYVEEAVKGGQEMSRVMKRVATGYELIIVGRRNGVVSPLSEEEKKSMSCAPS REGNPLPLEDDAQSDQFATE

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G44900		ATCHX4	cation/H+ exchanger 4, cation/...		Lus10032622 [exp]	0	1
AT5G05180			unknown protein		Lus10034251 [exp]	1.7	0.9379
					Lus10025225 [exp]	2.4	0.9330
AT1G55840			Sec14p-like phosphatidylinosit...		Lus10022533 [exp]	2.4	0.9197
AT3G53180		NodGS	nodulin/glutamine synthase-lik...		Lus10014407 [exp]	3.5	0.9240
AT5G48670	MADS	FEM111, AGL80	AGAMOUS-like 80 (.1)		Lus10022316 [exp]	3.9	0.8929
AT4G38810			Calcium-binding EF-hand family...		Lus10026291 [exp]	4.0	0.8897
AT5G05180			unknown protein		Lus10029012 [exp]	4.0	0.9149
AT3G53180		NodGS	nodulin/glutamine synthase-lik...		Lus10024005 [exp]	4.7	0.8817
AT2G32210			unknown protein		Lus10031204 [exp]	4.9	0.8990
AT4G19510			Disease resistance protein (TI...		Lus10008209 [exp]	5.9	0.9217

Compare expression of checked genes

Lus10032622 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.