Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G46740 336 / 9e-100 UBP21 ubiquitin-specific protease 21 (.1) AT4G17895 328 / 2e-97 UBP20 ubiquitin-specific protease 20 (.1) AT5G57990 263 / 3e-73 UBP23 ubiquitin-specific protease 23 (.1) AT3G14400 187 / 2e-49 UBP25 ubiquitin-specific protease 25 (.1) AT4G31670 187 / 2e-49 UBP18 ubiquitin-specific protease 18 (.1) AT5G65450 186 / 1e-48 UBP17 ubiquitin-specific protease 17 (.1) AT2G24640 170 / 9e-45 UBP19 ubiquitin-specific protease 19 (.1.2) AT1G17110 174 / 7e-44 UBP15 ubiquitin-specific protease 15 (.1.2) AT4G24560 171 / 8e-43 UBP16 ubiquitin-specific protease 16 (.1) AT2G22310 122 / 1e-29 ATUBP4 ubiquitin-specific protease 4 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10043126 [exp] 1267 / 0 AT5G46740 367 / 6e-116 ubiquitin-specific protease 21 (.1) Lus10043127 [exp] 723 / 0 AT5G46740 362 / 2e-115 ubiquitin-specific protease 21 (.1) Lus10017529 [exp] 281 / 1e-84 AT5G46740 218 / 5e-65 ubiquitin-specific protease 21 (.1) Lus10035825 [exp] 238 / 1e-64 AT5G57990 537 / 3e-178 ubiquitin-specific protease 23 (.1) Lus10036607 [exp] 237 / 2e-64 AT5G57990 536 / 5e-178 ubiquitin-specific protease 23 (.1) Lus10026918 [exp] 194 / 1e-51 AT2G24640 686 / 0.0 ubiquitin-specific protease 19 (.1.2) Lus10020116 [exp] 194 / 1e-51 AT2G24640 686 / 0.0 ubiquitin-specific protease 19 (.1.2) Lus10009273 [exp] 185 / 3e-47 AT4G24560 585 / 0.0 ubiquitin-specific protease 16 (.1) Lus10005591 [exp] 177 / 5e-46 AT3G14400 639 / 0.0 ubiquitin-specific protease 25 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G092400 [exp] 476 / 1e-150 AT4G17895 358 / 2e-112 ubiquitin-specific protease 20 (.1) Potri.001G142000 [exp] 447 / 3e-139 AT5G46740 350 / 9e-109 ubiquitin-specific protease 21 (.1) Potri.018G107500 [exp] 247 / 2e-67 AT5G57990 580 / 0.0 ubiquitin-specific protease 23 (.1) Potri.006G185200 [exp] 246 / 4e-67 AT5G57990 620 / 0.0 ubiquitin-specific protease 23 (.1) Potri.018G009500 [exp] 196 / 5e-52 AT2G24640 686 / 0.0 ubiquitin-specific protease 19 (.1.2) Potri.006G270600 [exp] 191 / 1e-50 AT2G24640 698 / 0.0 ubiquitin-specific protease 19 (.1.2) Potri.011G095200 [exp] 174 / 2e-44 AT1G17110 799 / 0.0 ubiquitin-specific protease 15 (.1.2) Potri.005G156900 [exp] 174 / 8e-44 AT4G24560 639 / 0.0 ubiquitin-specific protease 16 (.1) Potri.002G104800 [exp] 172 / 3e-43 AT4G24560 551 / 7e-179 ubiquitin-specific protease 16 (.1) Potri.011G112800 [exp] 169 / 3e-43 AT3G14400 690 / 0.0 ubiquitin-specific protease 25 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0125 [flax] [poplar] Peptidase_CA PF00443 [flax] [poplar] UCH Ubiquitin carboxyl-terminal hydrolase
Representative CDS sequence Show only first row Show all	>Lus10032623 pacid=23146243 polypeptide=Lus10032623 locus=Lus10032623.g ID=Lus10032623.BGIv1.0 annot-version=v1.0 ATGTCGATCAAGGATTACTACTCCCCCACCTCCGGCGGCGGCGGCGACGGCGGAGCAGTTGTCGACACCGATTCGGGCCCGTCCTTTCCCCTGGTTGAAA CCCTAGACGCAGTAGAGTTGCTGGAGCTGTCAGATCCACCTGAAGACCACGGCCCCTCAGTCGGGAACTCTGATTCCGTCTCTGCGCAAACCCTAGCTGG TTCGGAATCTGAAAATCCTCGTAACCTGCAGCATCCCCGAGCCGAGGAGGCTGTTCTGGGCGGTTCTTATGGTGTTGGCCTCGTGCATTTCCACTCTGCT TTTACTTCGTCCGAGGCAAAACCATTGGATTGCGAAGCCGTTTCAGGTGACGCATTGGATGTTCAACCTCTAGAAATAAGGATGGATGACTGCGTCGACG ACAACGATACTCCTGGTTCTCCTCCTGTACCAGAAACTGGAGCCAGCGAACCTTCCTCACCCGAAGGTAATCCCTACGGCGATGAGCCTATTAGCGATGA TGATGATGGAGGGAGATGGGATAGGAGGATGTTTCGTAGTTTTGGGCCTCGCTATCATCGCCCTATTCACTATTTCCCATGGCATACCCATCGATGGAGC CCAAAATATGATCAAGAGGATGATGAAGACAAGCCTAGCAGTTTTTTCTACCCCCCGCGGCGAACTGTTCCCACTGGCATGGGTGCTGGACTGTACAATC TCGGTAACACATGCTTCATTAATGCGATATTGCAATGTTTTACACACACTGTGCCTCTCGTCAAGGCTTTGCGATCTCACAGTCATTCATTGCCGTGCGA GCGAGGTATAGATGGGTTTTGTGTACTTGATGCACTTCGAGATCTCATAGAACATTCTTTGTCTTCTTCTGGGAAGATTATTGCTCCTCAAAACCTCTTT GACAACTTGAGTTGCATTTCATCCTTTTTCCGAAAATACCAGCAGGAAGATTCACATGAGTTCTTGCAGTGCTTGTTGGACAGGCTTGAGAGATGTTGTT TAGAACCAAATCCAGCTGAAGATTCCTCATCTTCTGATGCCAATAACATTGTGCAGCAGATTTTTGGAGGTCGTCTTGTGAGCAAACTGAAGTGCTGTTC CTGTGGCCACTTCTCTGACAAATATGAGCGCTTAATTGACTTGAGTTTGGAAATTGAAGAAGTTGGCAACCTACATGACGCCTTTGAGTCTTTCACCAAA GTGGAGATGATAGAGGATTCAGAAGCAAAGTTGACTTGTGATGGTTGCAAAGAGAAAGTATCCATGGAGAAGCAGCTTATGCTGGACAGGGCTCCTCAAA TTGCTACTTTGCATTTAAAGAGATTCAAGAGTGATGGATACTCTGTTGATAAGATTGGCAAACAGGTTGAGTTTCCTTTGGAGTTGGATTTAACGCCCTA CTCCAACCATGACGAGGATAGTAATGTGAATCTGAAATATCAATTGTATGGAGTTGTGGTGCACAATGGTTGGTCGCCTACCTCTGGGCATTACTTTTGC TATATAAGGTCCTCTCCTGGAAAATGGCACAAGTTGGATGATACAAAGGTAATTGAATGCCGAGAAGAATATGTATTATCTCAATCCGCATACATTCTCT TGTACGCCAGAGATGGCACGCCATGGTTTTCAACTTTGATGGAATCACAAAAGTTCAATGAAGATTTGGCCACTTCAAGCACTTCTCCAAAATCTGTTCT ACAAACACTGGAAGGGTATAATGGCATAGTTCCAGATGCTGCTGATGAAGTAACGGAGACCCAATCCAATTCCCTTCACAAACCATTGCATGAACATATT GAAATTAACGATCTCGTGGAAGGACCAAAATTCTGTGTTGACGAGATCCAAGTTGTGGAACCTCTGATAGTTATTGATGATCTGCGTGACAAAACAGAGT CTCCGGGTGCTATGTTCAACAAGGAAAAATCGTCTCCGGATGCTACTTTCAACAAGGAAAAATCATCTCCAGATGCTACGTTCAACAAGGAAAAATCATC TCCGGATGCTACGTTCAACAACGAAAAATCGTCTCTTCATGGTTTCCCTACAAGCAGCAATCACAAGACTTGTTGTAAGACTGGTGGAAACGATGATCCC CTCCCACAGGCACCACTGTTCATGCCTGCAGGTCCTTCCACGAATTATGCCAGGAAGCCAGAAAGTAGGTATCGAGCAAGTAAAGAGCAGCAGCAGGTGA AGGTCGGAATGACTGCAACTAAGCAGCAAGGAACAAAGAAGGGAGCGTTGGATCCTCAGAAGAGGGAAGCCATCCGGTATATAAACAAGAGGATGCCATC TTCAAAAAGGGCGGCCCAGTTAATGTCGTCATTAAATGATGCCACGAATGAGAAGAACGAAGGGTTGGGTTCGTCAACGTGCAAGAGATCCAGGTCCCCT GATCCCTACCGGAGATTCGTGCGGCCTACTGAATTTACGCGGTCAGGTAATAGAAATCATCATTTATCTTCTCGTGGACGTACACGTGGGCAAGGTCGAC GAAACAGGGGCAGAGGTCGTGGAAGTGGTGTCACTGAAGTCGTAATTTGTTGCTATTCTCAGGGTGCTGGACTGTTCAATTTCGGAAACACATGCTTCCT TAATGCGATATTGCAATGCTTCACACACACTGTGCCTCTCGTCAAGGCTTTACGATCTCACAGTCATTCATTGCCGTGCGAGCGAGGTATAGATGGGTTT TGTGTACTTGATGCACTCCGAGATCTCATAGAACGTTCTTTGGCTTCTTCTGGGAAGATCATTGCTCCTCAAAACCTTTTTGACAACTTGAGCTGCATTT CATCCTTTTTCCGAAGATACCAGCAGGAAGATGCACATGAATTCTTGCAGTGCTTGTTGGATAGGCTTGAGAGATGTTGTTTAGAACCAAATCCAGCTGA AGATTCCTCATTTTCTGATGCCAATAATATTGTGCAGCAGATTTTTGGAGGTCGTCTTGTAAGCAAACTCAAGTGTTGCTCGTGTGGCCACTTCTCTGAC AAATATGAGCCCTTAATTGACTTGAGTTTGGAAATTGAAGAAGTTGGCAACCTACATGACGCCTTTGAGTCTTTCACCAAAGTGGAGATGATAGAGGATT CAGAAGCAAAGTTGACTTGTGATGGTTGCAACGAGAAAGTATCCATGGAGAAGCAGCTTATGCTGGACAGGGCTCCTCAAATTGCTACTTTGCATTTAAA GAGATTCAAGAGTGATGGATACTCTGTTGATAAGATTGGCAAACATGTTGAGTTTCCTCTGGAGTTGGATCTAACGCCCTACTCCAACCATGACGTGGAT AGTAATGTGAGTTTGAAGTATCAATTGTATGGAGTTGTGGTGCACAACGGATGGTTGCCTACCTCTGGGCATTACTTTTGCTATATAAGGTCCTCGCCTG GAAAATGGCACAAGTTGGATGATACAAAGATATATGATTATCGAGAAGAATATGTATTATCTCAATCTGCATACATTCTCTTTTACGCCAGAGACGGCAC CCCATGGTTCTCAAGTTTGATGGAATCGCAAAAGTTTAACGAAGATCTAGGCAGTTCAAACACGTCGCCAAAATCTGTTCTACAAACAGTGGATGGAGAT GATGGTTTAGTTGCAGACGCTGCTGATGAAGAAATGGAGCCCCCGTCCAATTCACTTCGCAAATCATTGCATGAACAAAGTGAGATTCTTGATCTCGAGG AAGAAGGACCAAGCGTTTCTGGAGACGAGATCCAAGCTGTGAAAGAAGGGTATATAAACAAGAGGATGCCATCTTCAAGACGGGACTTCTATCCGGAAAA AAAATCTTCAAGACGGGACCAGTTACTGTCGTCATTAAATGATACCAGCTCGAATGAGAAGAAAGAAGGGTTGAGTTCATCAACGTGCAAGAGATCCAGG TCCCCTACTGACTCGTGTTTTGTTTGGTGGCAACGTTGTTGTTGCACAACTAGAATGGAAGCTTTACAATTGAGATCGCGAGATGCAAGCAAGTCTCCGA TCAATCCCAATTCAGGGAACACACTCCACTCCGACAGCCCCCTCGTCTGCGGCTGTGAGAAATGGATGAAGGAGATCGACAGAGAAAAATGA
AA sequence Show only first row Show all	>Lus10032623 pacid=23146243 polypeptide=Lus10032623 locus=Lus10032623.g ID=Lus10032623.BGIv1.0 annot-version=v1.0 MSIKDYYSPTSGGGGDGGAVVDTDSGPSFPLVETLDAVELLELSDPPEDHGPSVGNSDSVSAQTLAGSESENPRNLQHPRAEEAVLGGSYGVGLVHFHSA FTSSEAKPLDCEAVSGDALDVQPLEIRMDDCVDDNDTPGSPPVPETGASEPSSPEGNPYGDEPISDDDDGGRWDRRMFRSFGPRYHRPIHYFPWHTHRWS PKYDQEDDEDKPSSFFYPPRRTVPTGMGAGLYNLGNTCFINAILQCFTHTVPLVKALRSHSHSLPCERGIDGFCVLDALRDLIEHSLSSSGKIIAPQNLF DNLSCISSFFRKYQQEDSHEFLQCLLDRLERCCLEPNPAEDSSSSDANNIVQQIFGGRLVSKLKCCSCGHFSDKYERLIDLSLEIEEVGNLHDAFESFTK VEMIEDSEAKLTCDGCKEKVSMEKQLMLDRAPQIATLHLKRFKSDGYSVDKIGKQVEFPLELDLTPYSNHDEDSNVNLKYQLYGVVVHNGWSPTSGHYFC YIRSSPGKWHKLDDTKVIECREEYVLSQSAYILLYARDGTPWFSTLMESQKFNEDLATSSTSPKSVLQTLEGYNGIVPDAADEVTETQSNSLHKPLHEHI EINDLVEGPKFCVDEIQVVEPLIVIDDLRDKTESPGAMFNKEKSSPDATFNKEKSSPDATFNKEKSSPDATFNNEKSSLHGFPTSSNHKTCCKTGGNDDP LPQAPLFMPAGPSTNYARKPESRYRASKEQQQVKVGMTATKQQGTKKGALDPQKREAIRYINKRMPSSKRAAQLMSSLNDATNEKNEGLGSSTCKRSRSP DPYRRFVRPTEFTRSGNRNHHLSSRGRTRGQGRRNRGRGRGSGVTEVVICCYSQGAGLFNFGNTCFLNAILQCFTHTVPLVKALRSHSHSLPCERGIDGF CVLDALRDLIERSLASSGKIIAPQNLFDNLSCISSFFRRYQQEDAHEFLQCLLDRLERCCLEPNPAEDSSFSDANNIVQQIFGGRLVSKLKCCSCGHFSD KYEPLIDLSLEIEEVGNLHDAFESFTKVEMIEDSEAKLTCDGCNEKVSMEKQLMLDRAPQIATLHLKRFKSDGYSVDKIGKHVEFPLELDLTPYSNHDVD SNVSLKYQLYGVVVHNGWLPTSGHYFCYIRSSPGKWHKLDDTKIYDYREEYVLSQSAYILFYARDGTPWFSSLMESQKFNEDLGSSNTSPKSVLQTVDGD DGLVADAADEEMEPPSNSLRKSLHEQSEILDLEEEGPSVSGDEIQAVKEGYINKRMPSSRRDFYPEKKSSRRDQLLSSLNDTSSNEKKEGLSSSTCKRSR SPTDSCFVWWQRCCCTTRMEALQLRSRDASKSPINPNSGNTLHSDSPLVCGCEKWMKEIDREK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G46740		UBP21	ubiquitin-specific protease 21...		Lus10032623 [exp]	0	1
AT4G00660		ATRH8	RNAhelicase-like 8 (.1.2)		Lus10017804 [exp]	1.0	0.9048
AT5G17020		HIT2, ATXPO1, A...	HEAT-INTOLERANT 2, ARABIDOPSIS...		Lus10009572 [exp]	2.8	0.8913
AT5G24340			3'-5' exonuclease domain-conta...		Lus10022376 [exp]	3.2	0.8579
AT5G22220	E2F_DP	ATE2FB, E2F1	E2F transcription factor 1 (.2...		Lus10005209 [exp]	3.9	0.8429
AT1G05910			cell division cycle protein 48...		Lus10025576 [exp]	5.3	0.8668
AT2G20000		CDC27b, HBT	HOBBIT, CDC27 family protein ...		Lus10012968 [exp]	5.7	0.8741
AT5G25800			Polynucleotidyl transferase, r...		Lus10029748 [exp]	6.3	0.8660
AT1G09000		MAPKKK1, ANP1	MAP KINASE KINASE KINASE 1, NP...		Lus10031506 [exp]	7.5	0.8099
AT1G10520		AtPol{lambda}	DNA polymerase {lambda}, DNA p...		Lus10030831 [exp]	9.7	0.8355
AT4G01270			RING/U-box superfamily protein...		Lus10005127 [exp]	11.6	0.8697

Compare expression of checked genes

Lus10032623 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.