Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G33410 285 / 1e-92 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) AT4G14300 284 / 3e-92 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) AT4G26650 248 / 8e-78 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) AT5G55550 243 / 1e-75 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2), RNA-binding (RRM/RBD/RNP motifs) family protein (.3), RNA-binding (RRM/RBD/RNP motifs) family protein (.4) AT3G07810 230 / 3e-70 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) AT5G47620 217 / 6e-66 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2), RNA-binding (RRM/RBD/RNP motifs) family protein (.3), RNA-binding (RRM/RBD/RNP motifs) family protein (.4) AT1G58470 186 / 5e-55 XF41, ATRBP1 RNA-binding protein 1 (.1) AT1G17640 176 / 5e-51 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) AT3G13224 167 / 6e-48 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) AT5G40490 164 / 6e-46 RNA-binding (RRM/RBD/RNP motifs) family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10043124 [exp] 522 / 0 AT2G33410 334 / 2e-111 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Lus10011783 [exp] 325 / 5e-108 AT4G14300 290 / 1e-94 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Lus10022889 [exp] 284 / 2e-92 AT4G14300 315 / 9e-105 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Lus10024937 [exp] 271 / 3e-87 AT4G14300 306 / 4e-101 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Lus10023740 [exp] 270 / 3e-87 AT4G14300 276 / 6e-90 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Lus10032579 [exp] 242 / 4e-75 AT3G07810 447 / 8e-154 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Lus10043168 [exp] 242 / 7e-75 AT3G07810 456 / 2e-157 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Lus10039054 [exp] 229 / 3e-70 AT3G07810 428 / 4e-147 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Lus10017555 [exp] 229 / 1e-69 AT3G07810 423 / 7e-144 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G170400 [exp] 367 / 7e-124 AT4G14300 317 / 2e-104 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Potri.010G067500 [exp] 359 / 7e-121 AT4G14300 302 / 7e-99 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Potri.002G258600 [exp] 293 / 1e-95 AT4G14300 277 / 1e-89 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Potri.014G195300 [exp] 290 / 1e-94 AT4G14300 305 / 2e-100 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Potri.011G088100 [exp] 238 / 2e-73 AT3G07810 428 / 1e-146 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Potri.001G361300 [exp] 237 / 3e-73 AT3G07810 433 / 1e-148 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Potri.006G015700 [exp] 234 / 4e-72 AT3G07810 447 / 8e-154 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Potri.016G010200 [exp] 232 / 4e-71 AT3G07810 413 / 2e-140 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Potri.002G222400 [exp] 229 / 3e-70 AT3G07810 439 / 8e-151 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Potri.014G161600 [exp] 225 / 1e-68 AT3G07810 498 / 3e-174 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0221 [flax] [poplar] RRM PF00076 [flax] [poplar] RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Representative CDS sequence Show only first row Show all	>Lus10032624 pacid=23146380 polypeptide=Lus10032624 locus=Lus10032624.g ID=Lus10032624.BGIv1.0 annot-version=v1.0 ATGGATTCAGATCAGGGGAAGCTTTTCGTCGGCGGGATTTCCTGGGAGACGACGGAGGACAAGCTCACTGAACACTTCGGACAATACGGAGATGTTCTGC AGACCGCTGTAATGCGGGACAAAACCACCGGCAGGCCCAGGGGTTTTGGGTTCGTCGTGTTTGCAGATCCTACTATTCTCGATGCCGTTCTTCAGGATAC CCACACCATTGATGGTCGAACGGTCGAGGCAAAGAGGGCATTATCAAGAGAGGAGCAACAAAGCAACCCTAGATCTGGGAATTCCAGTTCTGCTAGAAGC TCTGGTGGTGTTGGTGGTAGCAGCGGTGTTAGGACTAAGAAGATTTTTGTTGGTGGGTTACCTCCCTCGGTGATGGAAGATGTATTCCGCCAATATTTCG AAGCTTATGGCCAGGTTACCGACGTAGTAATAATGTATGACCAAACCACACAACGTCCCCGTGGATTTGGATTCGTTTCCTTTGATTCTGAGGATTCGGT TGATAGGGTGTTGCACAAGACTTTTCATGATTTGAGCGGCAAGCAAGTTGAAGTGAAGCGGGCTCTTCCTAAAGATGCAAATCCCGGTGGAGGCAGTCGC TCCTCCATGGGTGGTGGTAATGCTGGTGGTGGTGGGGGTTATCAAAGCTATGGTGGGAATTCAAGCTCATATGATGGTAGAATGGATTCAAATAGGTACA TGCAGCCCCAAACTGCTGGAGGAGGTAGCTTTCCTCCTTACGGGGCATCTGGCTACAATACGACACCTGGATATGGAGGCTATGGTGCTGGAAGTTATGG AGGTTATGGTAGTGCTGGGTATGGGGCTACTGGAGGTGCACCTTATGGAAACCCCAATGTCCCGAATGCTGGATATAGTAGCGGTCCACCTGGTGCTCCT AGAACTTCATGGAATAATCAGTCTCCGGGTTATGGTGCTATGGGCTATGGAGGCTCTACACCAACAAGCCAAACACAAAGCGGACCTGGTGGTTATAATC AAGGTTACGGTTATGGTAGCTATGCATCAAATGATGGATCTTATGGTAATCCAGCTGGGTACGGAGGACGTTCTGGCGGTACTCCTGGAGAAGTACAAGG GGACAGTGCAGGCTATGGTGGAGGTGGTTATGGTGATGCAAATGTGAGCGGAGGAGGTCATGCTAATGCAACATGGAGATCTGAGTCTGCACAAGGTTCT GGGAATTATGCATCTCAAGGGAATGGTGCTCACACTAGTCAAGTTGCTTATGGTGGTGGTTATGGAAGTGCTCCAGCCTAA
AA sequence Show only first row Show all	>Lus10032624 pacid=23146380 polypeptide=Lus10032624 locus=Lus10032624.g ID=Lus10032624.BGIv1.0 annot-version=v1.0 MDSDQGKLFVGGISWETTEDKLTEHFGQYGDVLQTAVMRDKTTGRPRGFGFVVFADPTILDAVLQDTHTIDGRTVEAKRALSREEQQSNPRSGNSSSARS SGGVGGSSGVRTKKIFVGGLPPSVMEDVFRQYFEAYGQVTDVVIMYDQTTQRPRGFGFVSFDSEDSVDRVLHKTFHDLSGKQVEVKRALPKDANPGGGSR SSMGGGNAGGGGGYQSYGGNSSSYDGRMDSNRYMQPQTAGGGSFPPYGASGYNTTPGYGGYGAGSYGGYGSAGYGATGGAPYGNPNVPNAGYSSGPPGAP RTSWNNQSPGYGAMGYGGSTPTSQTQSGPGGYNQGYGYGSYASNDGSYGNPAGYGGRSGGTPGEVQGDSAGYGGGGYGDANVSGGGHANATWRSESAQGS GNYASQGNGAHTSQVAYGGGYGSAPA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G33410			RNA-binding (RRM/RBD/RNP motif...		Lus10032624 [exp]	0	1
AT1G76810			eukaryotic translation initiat...		Lus10030500 [exp]	2.0	0.9490
AT4G00930		CIP4.1	COP1-interacting protein 4.1 (...		Lus10011397 [exp]	3.0	0.9452
AT3G47300		SELT	SELT-like protein precursor (....		Lus10001253 [exp]	3.5	0.9279
AT3G53630			unknown protein		Lus10023752 [exp]	3.5	0.9439
AT1G76820			eukaryotic translation initiat...		Lus10012856 [exp]	3.5	0.9482
AT5G06540			Pentatricopeptide repeat (PPR)...		Lus10029344 [exp]	3.6	0.9268
AT2G21090			Pentatricopeptide repeat (PPR-...		Lus10005064 [exp]	4.0	0.9359
AT4G27070		TSB2	tryptophan synthase beta-subun...		Lus10011154 [exp]	5.0	0.9414
AT5G62030			diphthamide synthesis DPH2 fam...		Lus10038750 [exp]	5.2	0.9068
AT4G27070		TSB2	tryptophan synthase beta-subun...		Lus10043059 [exp]	8.9	0.9287

Compare expression of checked genes

Lus10032624 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.