Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G50530 590 / 0 CBS / octicosapeptide/Phox/Bemp1 (PB1) domains-containing protein (.1) AT5G50640 590 / 0 CBS / octicosapeptide/Phox/Bemp1 (PB1) domains-containing protein (.1) AT5G63490 585 / 0 CBS / octicosapeptide/Phox/Bemp1 (PB1) domains-containing protein (.1) AT3G52950 479 / 1e-164 CBS / octicosapeptide/Phox/Bemp1 (PB1) domains-containing protein (.1), CBS / octicosapeptide/Phox/Bemp1 (PB1) domains-containing protein (.2) AT2G36500 449 / 5e-153 CBS / octicosapeptide/Phox/Bemp1 (PB1) domains-containing protein (.1) AT1G47271 41 / 0.0006 Cystathionine beta-synthase (CBS) family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10043123 [exp] 899 / 0 AT5G50530 714 / 0.0 CBS / octicosapeptide/Phox/Bemp1 (PB1) domains-containing protein (.1) Lus10025698 [exp] 453 / 1e-154 AT3G52950 728 / 0.0 CBS / octicosapeptide/Phox/Bemp1 (PB1) domains-containing protein (.1), CBS / octicosapeptide/Phox/Bemp1 (PB1) domains-containing protein (.2) Lus10035965 [exp] 440 / 5e-149 AT3G52950 714 / 0.0 CBS / octicosapeptide/Phox/Bemp1 (PB1) domains-containing protein (.1), CBS / octicosapeptide/Phox/Bemp1 (PB1) domains-containing protein (.2) Lus10019117 [exp] 42 / 0.0005 AT5G10860 347 / 2e-123 CBS domain containing protein 3, Cystathionine beta-synthase (CBS) family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G099600 [exp] 725 / 0 AT5G50530 639 / 0.0 CBS / octicosapeptide/Phox/Bemp1 (PB1) domains-containing protein (.1) Potri.015G098100 [exp] 670 / 0 AT5G50530 628 / 0.0 CBS / octicosapeptide/Phox/Bemp1 (PB1) domains-containing protein (.1) Potri.007G098400 [exp] 495 / 5e-171 AT3G52950 728 / 0.0 CBS / octicosapeptide/Phox/Bemp1 (PB1) domains-containing protein (.1), CBS / octicosapeptide/Phox/Bemp1 (PB1) domains-containing protein (.2) Potri.005G070500 [exp] 493 / 5e-170 AT3G52950 750 / 0.0 CBS / octicosapeptide/Phox/Bemp1 (PB1) domains-containing protein (.1), CBS / octicosapeptide/Phox/Bemp1 (PB1) domains-containing protein (.2) Potri.005G228300 [exp] 45 / 6e-05 AT1G47271 251 / 1e-85 Cystathionine beta-synthase (CBS) family protein (.1) Potri.013G161500 [exp] 44 / 0.0001 AT5G10860 343 / 8e-122 CBS domain containing protein 3, Cystathionine beta-synthase (CBS) family protein (.1) Potri.017G000100 [exp] 42 / 0.0006 AT5G10860 339 / 2e-120 CBS domain containing protein 3, Cystathionine beta-synthase (CBS) family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00571 [flax] [poplar] CBS CBS domain CL0072 [flax] [poplar] Ubiquitin PF00564 [flax] [poplar] PB1 PB1 domain
Representative CDS sequence Show only first row Show all	>Lus10032625 pacid=23146331 polypeptide=Lus10032625 locus=Lus10032625.g ID=Lus10032625.BGIv1.0 annot-version=v1.0 ATGGCGAGTCAAGGCGGCTCTTCTAGGAAAAGTTTGACCTTCTCTAGCGCCCCTGTCAACGGGCGGAGGAAATCAATCGCTGACAACGGAGCCGCTGGCG ATGCTTCCCGAAAAGCGTTAGTCATTTCTCGTCCTGTGGGTTTAACGGGAGAGCGTACTGTTAAGCGGTTGCGCTTGTCAAAGGCTTTAACAGTACCTGA AACTACAAGTATATATGATGCCTGCCGAAGAATGGCTGCTCGAAGACTTGATGCCTTGTTGCTGACCGACTCCAATGCATTACTCTGTGGAATCCTTACA GACAAGGACATAGCAACAAGGGTCATCGCTCGTGAAGTTAATCTAGAGGAAACTCCCGTTTCAAAAGTTATGACGAGGAATCCAGTTTTTGTTCTCTCTG ATACTCTGGCTGTTGAAGCTTTACAGAAAATGGTGCAAGGAAAATTCAGACATTTGCCTGTTGTAGAGAATGGGGAGGTTGTCGCCTTACTGGATATAGC AAAGTGTTTATATGATGCAATAGCTCGTATGGAAAGAGCCGCTGAAAAGGGGAAAGCAATTGCTGCAGCTGTTGAAGGTGTTGAGAAAAATTGGGGTGCA TCGCTTTCTGGACAAAGTTCGTTCATTGAGGCACTTCGGGAGCGGATGTTCAAACCTTCATTATTGACAATAGTTCCGGAAAATTCAAAGGTCGTGACAG TTTCACCAACTGAGACAGTTTTGGCAGCAACGAAAAAGATGCTTGAATCTCGGGCTAGCTGTGCTGTGGTGACGGTCGATGATAAACCACGTGGAATTTT AACCTCAAAAGACATCTTGATGCGTGTGATAGCACAAAATATTGCCCCGGATTCCACGTTTGTTGAAAAGGTCATGACTCCAAATCCCGAGTGTGCTACA ACTGATACACCTATTGTTGACGCTTTGCATACCATGCATGATGGGAAGTTTTTGCATCTTCCTGTGGTGGATAAGGATGGTGTTGTAGTTGCCGTTGTAG ATGTGATTCACATTACTCATGCTGCAGTGACCACAGTTGGAAACGCTGGTGGAGTAAATACCGAGGCCACAAGCACGATGATGCAGAAGTTCTGGGATTC CGCGATGGCACTAAGTCCTCGCGATGATGATGAAGACATTCATAGTGAAGGGTCCTTAAAACTCAATTCTGAAGGAACAGAAACAGGGAGGTCCCTTCCC TATCCTTCATCGTCGGTTCCAAACACATTTTCCTTCAAGATTGAAGATAAAAGGGGGAGGATGCACAGATTTACATGTGACACTAGAAGTTTGACAGATC TGATAACAGCGATTCTTCAGAGGATTGGTACTGATATCGACCGCAATAACTTGCCTCAGATTTTGTATGAAGATGAGGACCATGACAAAGTTGTTGTGGA GTCTGATAATGATCTATCGACCGCGGTAGAGCACGCACAAGCAGCTGGTTTAAAGGGGTTGAGATTGCATTTAGACTATTCGGGGGATCGCGGTCACAGG AGAGGGAGAGGGAGGCAAGAATATAGTTCAGGAAGTTTAGAGTATGAGCAAAAAGATGCATGGGCAGCTGCGTACAGTGCAGTTGCAGCAGGTGCTGCTT TGGTTGCTGGCTTAGGATTCTTTGCATACCTGAAGAGAGCTGGCAGCTGA
AA sequence Show only first row Show all	>Lus10032625 pacid=23146331 polypeptide=Lus10032625 locus=Lus10032625.g ID=Lus10032625.BGIv1.0 annot-version=v1.0 MASQGGSSRKSLTFSSAPVNGRRKSIADNGAAGDASRKALVISRPVGLTGERTVKRLRLSKALTVPETTSIYDACRRMAARRLDALLLTDSNALLCGILT DKDIATRVIAREVNLEETPVSKVMTRNPVFVLSDTLAVEALQKMVQGKFRHLPVVENGEVVALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEKNWGA SLSGQSSFIEALRERMFKPSLLTIVPENSKVVTVSPTETVLAATKKMLESRASCAVVTVDDKPRGILTSKDILMRVIAQNIAPDSTFVEKVMTPNPECAT TDTPIVDALHTMHDGKFLHLPVVDKDGVVVAVVDVIHITHAAVTTVGNAGGVNTEATSTMMQKFWDSAMALSPRDDDEDIHSEGSLKLNSEGTETGRSLP YPSSSVPNTFSFKIEDKRGRMHRFTCDTRSLTDLITAILQRIGTDIDRNNLPQILYEDEDHDKVVVESDNDLSTAVEHAQAAGLKGLRLHLDYSGDRGHR RGRGRQEYSSGSLEYEQKDAWAAAYSAVAAGAALVAGLGFFAYLKRAGS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G50530			CBS / octicosapeptide/Phox/Bem...		Lus10032625 [exp]	0	1
AT5G53130		ATCNGC1, CNGC1	CYCLIC NUCLEOTIDE-GATED CHANNE...		Lus10003395 [exp]	4.1	0.8962
AT2G45500			AAA-type ATPase family protein...		Lus10038001 [exp]	8.1	0.8675
AT3G54480		SKP5, SKIP5	SKP1/ASK-interacting protein 5...		Lus10039556 [exp]	8.9	0.8697
AT5G05140			Transcription elongation facto...		Lus10027295 [exp]	9.4	0.8932
AT5G05140			Transcription elongation facto...		Lus10039000 [exp]	10.1	0.8920
AT3G48530		KING1	SNF1-related protein kinase re...		Lus10022458 [exp]	11.8	0.8800
AT2G43140	bHLH	bHLH129	basic helix-loop-helix (bHLH) ...		Lus10026733 [exp]	14.0	0.8641
AT3G12100			Cation efflux family protein (...		Lus10021058 [exp]	14.7	0.8538
AT1G11530		ATCXXS1	C-terminal cysteine residue is...		Lus10020070 [exp]	14.9	0.8779
AT4G16760		ATACX1, ACX1	acyl-CoA oxidase 1 (.1.2)		Lus10040183 [exp]	15.1	0.8839

Compare expression of checked genes

Lus10032625 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.