Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G24990 528 / 0 Serine/threonine-protein kinase Rio1 (.1) AT5G37350 525 / 0 Serine/threonine-protein kinase Rio1 (.1.2) AT3G51270 52 / 6e-07 protein serine/threonine kinases;ATP binding;catalytics (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017927 [exp] 713 / 0 AT2G24990 677 / 0.0 Serine/threonine-protein kinase Rio1 (.1) Lus10002728 [exp] 709 / 0 AT2G24990 681 / 0.0 Serine/threonine-protein kinase Rio1 (.1) Lus10013682 [exp] 52 / 8e-07 AT3G51270 585 / 0.0 protein serine/threonine kinases;ATP binding;catalytics (.1.2) Lus10017941 [exp] 51 / 1e-06 AT3G51270 580 / 0.0 protein serine/threonine kinases;ATP binding;catalytics (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G096100 [exp] 608 / 0 AT5G37350 701 / 0.0 Serine/threonine-protein kinase Rio1 (.1.2) Potri.017G001100 [exp] 52 / 6e-07 AT3G51270 538 / 0.0 protein serine/threonine kinases;ATP binding;catalytics (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF01163 [flax] [poplar] RIO1 RIO1 family
Representative CDS sequence Show only first row Show all	>Lus10032627 pacid=23146367 polypeptide=Lus10032627 locus=Lus10032627.g ID=Lus10032627.BGIv1.0 annot-version=v1.0 ATGTCTACGGAGGTTGAAAACTCTGAGCCGGTAGAACAGCTCGCCGGAGAAGAAGATCATGAACATCTGTGGTCTTCCGACTCTGAAATCGGGGATGCAT TGGATTGGTTGGGTGCCAAGTACGACGGTGATGATGGCGAGGGAAGTTTTGCACCCAATTCAAGGCGGCCGAATGCTCATGGAGGCCTCCACTCTCGGCC GAGATCGTCGACCCTTCAACCTCTTGCCAATCCTAATGGATGGTTGCAGGAATGGGAAAAGAGGGGGAAAGTTGGGATGCATAATTCTGTGATTACTGCG ATTCGTGCAAGTGTTCGGGGCATGGAAATCGGAAAAACTAAAACTACTGAGAAAGCAGACCGCGCTACTGTTGAGCAGGTCATTGATCCTAGGACCCGAA TGGTTTTGTTCAAAATGCTTAATCGTGGGGTGTTTAATGATATCAATGGCTGTATCTCAACCGGAAAAGAGGAAAATGTCTACCATGCAACAAAATCCGA TGGTCAGGAGTTTGCCATCAAAGTGTACAAAACATCCGTACTCGTCTTCAAGATAAAAGCTGCTGGAATTAGGTGTCCAACTCCTTATCTGTTGAGGCTT CATGTCCTGGTAATGGAATTCATAGGGAAAGATGGGTGGGCAGCACCGCGCCTGAAGGATTCTGGATTATCATTGGATAAGTTGCGGAAAGGTTATATGG AGATGATCATGTACCTGCGTATACTGTATCAAAAGTGCAAACTTGTACACGGCGACCTCAGTGAGTTCAACATACTTTATTTCGAGGGTCATCTTCATAT AATTGACGTATCACAGTCAGTTGATCTTGACCATCCCCGGGCCCTTGATTTCTTACGTGAAGATTGCGGGCATGTTTCTGACTTCTTTAAGAAACATGGA GTGGCTGTGATGAATATTAGGGAGCTGTTTGACTTTGTGGTGGATCCCAATATTACAGACGACTCGATTGACAGCTACTTGGAACAGGTCCAAAAAACAA TAATGAGCAGAGATGTTACTGCAGAGGATGAAATTGCAGATTCTGTGTTTGTTCAGGCATACATTCCGAAGACACTAGATGTCGTGAAGGATGCGGAAGA GGATGTTAAACGGCTGAAGAGTGGGCAGGACACCGATGACTTGTACTACAAGACAATCATAGGATTGAAGGGCGTTCTTTCTAAAGCCGCCGACCAGAAA AACAATGAGCATAAGGATGAAGGTAAGCCTGGAGAAGAGTCGTTGGTCAATCAGGATGATGCTGGTTCAGACTCTAAAAAGGATAGTGGGTTGAGCGATT CAGTTGAAGGAAGCAGTTGTGTGTCGGAAACGAAGAAACAGAGTCCAGATGATAGTAAAGCTGCGAGGAAAGTGAAGAAGAAGAAAGTGAAAGAAGAGAA GAGGGAAGCTCGGAAGACTAAAGTCCCCAAGGCTGTTAAGAAAAGGAAGAAGAAAATGTCGAAAGCAAAGAAGAACAGATAG
AA sequence Show only first row Show all	>Lus10032627 pacid=23146367 polypeptide=Lus10032627 locus=Lus10032627.g ID=Lus10032627.BGIv1.0 annot-version=v1.0 MSTEVENSEPVEQLAGEEDHEHLWSSDSEIGDALDWLGAKYDGDDGEGSFAPNSRRPNAHGGLHSRPRSSTLQPLANPNGWLQEWEKRGKVGMHNSVITA IRASVRGMEIGKTKTTEKADRATVEQVIDPRTRMVLFKMLNRGVFNDINGCISTGKEENVYHATKSDGQEFAIKVYKTSVLVFKIKAAGIRCPTPYLLRL HVLVMEFIGKDGWAAPRLKDSGLSLDKLRKGYMEMIMYLRILYQKCKLVHGDLSEFNILYFEGHLHIIDVSQSVDLDHPRALDFLREDCGHVSDFFKKHG VAVMNIRELFDFVVDPNITDDSIDSYLEQVQKTIMSRDVTAEDEIADSVFVQAYIPKTLDVVKDAEEDVKRLKSGQDTDDLYYKTIIGLKGVLSKAADQK NNEHKDEGKPGEESLVNQDDAGSDSKKDSGLSDSVEGSSCVSETKKQSPDDSKAARKVKKKKVKEEKREARKTKVPKAVKKRKKKMSKAKKNR

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G24990			Serine/threonine-protein kinas...		Lus10032627 [exp]	0	1
AT5G48840		ATPTS, PANC	ARABIDOPSIS THALIANA PANTOTHEN...		Lus10025932 [exp]	1.4	0.8894
AT3G13970		APG12B, APG12	AUTOPHAGY 12 B, AUTOPHAGY 12, ...		Lus10000432 [exp]	2.8	0.8923
AT1G79750		ATNADP-ME4	Arabidopsis thaliana NADP-mali...		Lus10034963 [exp]	2.8	0.8590
AT1G53710			Calcineurin-like metallo-phosp...		Lus10042936 [exp]	3.6	0.8458
AT2G17020			F-box/RNI-like superfamily pro...		Lus10022652 [exp]	3.9	0.8780
AT2G23090			Uncharacterised protein family...		Lus10019287 [exp]	4.0	0.8382
AT4G03115			Mitochondrial substrate carrie...		Lus10009777 [exp]	4.9	0.8721
AT1G09730			Cysteine proteinases superfami...		Lus10000917 [exp]	5.5	0.8636
AT3G52120			SWAP (Suppressor-of-White-APri...		Lus10015703 [exp]	6.6	0.8543
AT4G35230		BSK1	BR-signaling kinase 1 (.1)		Lus10003329 [exp]	7.1	0.8372

Compare expression of checked genes

Lus10032627 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.