Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G24810 707 / 0 Protein kinase superfamily protein (.1.2.3) AT5G50330 698 / 0 Protein kinase superfamily protein (.1.2) AT5G24810 191 / 8e-52 ABC1 family protein (.1.2) AT5G64940 162 / 2e-42 ATATH13, ATOSA1 A. THALIANA OXIDATIVE STRESS-RELATED ABC1-LIKE PROTEIN 1, ARABIDOPSIS THALIANA ABC2 HOMOLOG 13, ABC2 homolog 13 (.1.2) AT1G65950 147 / 4e-38 Protein kinase superfamily protein (.1) AT5G05200 139 / 2e-35 Protein kinase superfamily protein (.1) AT3G07700 133 / 1e-32 Protein kinase superfamily protein (.1.2.3) AT1G71810 131 / 4e-32 Protein kinase superfamily protein (.1) AT1G79600 130 / 9e-32 Protein kinase superfamily protein (.1) AT2G40090 126 / 6e-31 ATATH9 ABC2 homolog 9 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10043122 [exp] 972 / 0 AT4G24810 696 / 0.0 Protein kinase superfamily protein (.1.2.3) Lus10026970 [exp] 204 / 2e-56 AT5G24810 1368 / 0.0 ABC1 family protein (.1.2) Lus10020168 [exp] 195 / 3e-53 AT5G24810 1358 / 0.0 ABC1 family protein (.1.2) Lus10026971 [exp] 182 / 5e-49 AT5G24810 1038 / 0.0 ABC1 family protein (.1.2) Lus10036636 [exp] 157 / 8e-41 AT5G64940 1087 / 0.0 A. THALIANA OXIDATIVE STRESS-RELATED ABC1-LIKE PROTEIN 1, ARABIDOPSIS THALIANA ABC2 HOMOLOG 13, ABC2 homolog 13 (.1.2) Lus10035853 [exp] 145 / 9e-37 AT5G64940 1046 / 0.0 A. THALIANA OXIDATIVE STRESS-RELATED ABC1-LIKE PROTEIN 1, ARABIDOPSIS THALIANA ABC2 HOMOLOG 13, ABC2 homolog 13 (.1.2) Lus10012865 [exp] 139 / 2e-35 AT5G05200 680 / 0.0 Protein kinase superfamily protein (.1) Lus10006363 [exp] 137 / 3e-34 AT3G07700 1066 / 0.0 Protein kinase superfamily protein (.1.2.3) Lus10030509 [exp] 135 / 6e-34 AT5G05200 796 / 0.0 Protein kinase superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G091000 [exp] 773 / 0 AT5G50330 752 / 0.0 Protein kinase superfamily protein (.1.2) Potri.012G093600 [exp] 747 / 0 AT4G24810 723 / 0.0 Protein kinase superfamily protein (.1.2.3) Potri.006G276600 [exp] 200 / 5e-55 AT5G24810 1253 / 0.0 ABC1 family protein (.1.2) Potri.018G003400 [exp] 192 / 2e-52 AT5G24810 1250 / 0.0 ABC1 family protein (.1.2) Potri.018G003600 [exp] 188 / 4e-52 AT5G24810 956 / 0.0 ABC1 family protein (.1.2) Potri.007G082500 [exp] 159 / 2e-41 AT5G64940 1081 / 0.0 A. THALIANA OXIDATIVE STRESS-RELATED ABC1-LIKE PROTEIN 1, ARABIDOPSIS THALIANA ABC2 HOMOLOG 13, ABC2 homolog 13 (.1.2) Potri.005G083200 [exp] 154 / 1e-39 AT5G64940 1068 / 0.0 A. THALIANA OXIDATIVE STRESS-RELATED ABC1-LIKE PROTEIN 1, ARABIDOPSIS THALIANA ABC2 HOMOLOG 13, ABC2 homolog 13 (.1.2) Potri.004G075100 [exp] 148 / 4e-38 AT1G65950 660 / 0.0 Protein kinase superfamily protein (.1) Potri.019G061300 [exp] 136 / 2e-34 AT5G05200 830 / 0.0 Protein kinase superfamily protein (.1) Potri.014G168600 [exp] 136 / 9e-34 AT3G07700 1038 / 0.0 Protein kinase superfamily protein (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF03109 [flax] [poplar] ABC1 ABC1 family
Representative CDS sequence Show only first row Show all	>Lus10032628 pacid=23146265 polypeptide=Lus10032628 locus=Lus10032628.g ID=Lus10032628.BGIv1.0 annot-version=v1.0 ATGTTTCCTCTTCCTCCTCCCCTCCATCCTGACTTGAAGCACCTACAGGACAAGCTCTCCGCTTCCATTCTCCCTTGGCAGCGTTCTTTCCATTTCTGGG TTCGCACCGCCAATATCTACGCCGGCTACAAGGCTTTCCAATTCCGAGTCAGTTTTGTCAAGGATGTCCAGAAGCAGGAAGCAATGTGGGAGCGCCAGCA TGAGCTCGCTGCTCATAAGATCTACTCCTTGTGCTCTGATCTTGGCGGCTTCTTCCTCAAGGTTGCTCAAATCATTGGGAAGCCTGACTTGGCTCCAGCT GCATGGGTTAAACGCCTTGTTACCTTGTGTGATCAAGCTCCTGCTACTCCTTACCATACCGTCCGGCTTGTTCTCGAGAATGAATTAGGTCAAAGCTTAG ATGACATTTTTGATCGGTTTGACTTGGAACCCCTTGGTTCTGCTTCCATCGCACAGGTTCATCGCGCTAGATTGAAAGGTGATAATACTGATGTCGTTGT CAAGGTGCAACATCCTGGCGTTGAGGATCTGATGATGACAGACATCCGTAACTTGCAAGCATTTGCTTGCTACATGCAGAAGACTGATATTAAGTTTGAT TTGTATTCCATAACTAAAGAGATGGAGAAGCAGATTGGATATGAATTTGACTTCGCTAGAGAGGCTGAAGCTATGCATAGGATCCGCCAATTTCTGTATG AGAATAACAAAAAAAGTCCCGTCCTTGTCCCCCGTGTGCTGAAGGATATAGTCACCAGGAGGGTCTTGGTAATGGAATACATGGACGGTATCCCAATTTT AAATCTTGGCGACGAAATGGGCAAAAGAGGAATAAATCCAGGTGGGAAGATAGCAGCAGCTGCAAAGCTGAACATACTTGAAAGCTTAACGCTCGCATAT GGGCAAATGATACTGAAGAGTGGTTTCTTCCATGCTGATCCCCATCCAGGAAACATTTTGATATGTAAAGGTTCACAGGCATGGGTGATTCTCGACATAT TCCTTCCTGTTGGTAATGTAGCTTTGCTAGACTATGGGCAAGTGAAGGACCTCCCAGATGATTTAAGGCTTGGATACGCAGAATTGGTACTTGCTATTGC TGATAACGATCCACTGGGAGCAAAACAGAGCTACAAGAAGCTGGGAATCAAAACCTTAAGCAATTGTGGCGCTGATGAAGACCGGGAAATGCTAAGGTTG GCACAGACAATGTTTGACTCAAAGTTACCCCCTGGGGTTGAAATGTTGCAGCCTTTCTCTGACGATTCTTCACTTAAAAAGTTGTCTGTTCAGGCCTTCC CGGAGGAGCTATTTTCGATACTCAGGACAGTACATCTATTGAGAGGGCTTAGTGTTGGTCTGGGGCTAAACTACTCGTGTGCAGAACAGTGGAGACCCAT TGCAGAAGAAGCGTTGTATGGTGCTGGCAGATTGAAAGACTTTCCAGGCCTTTGTCAGGGTTCTGTTAACACTTTACTTAATGTGGCTTTGGGTTCCAGA TGGAGACCGGAGGATTCCAGTTCAAAGACGTGGATTCTTGCGGAGATTATTTCGCAGGAATACATGAACTTAGCAAACATTATGTCTAGTGCTCGTCTCG TGATGGCCGAGTTCACTCACCCGCCCACCATTATTGCTAGATAG
AA sequence Show only first row Show all	>Lus10032628 pacid=23146265 polypeptide=Lus10032628 locus=Lus10032628.g ID=Lus10032628.BGIv1.0 annot-version=v1.0 MFPLPPPLHPDLKHLQDKLSASILPWQRSFHFWVRTANIYAGYKAFQFRVSFVKDVQKQEAMWERQHELAAHKIYSLCSDLGGFFLKVAQIIGKPDLAPA AWVKRLVTLCDQAPATPYHTVRLVLENELGQSLDDIFDRFDLEPLGSASIAQVHRARLKGDNTDVVVKVQHPGVEDLMMTDIRNLQAFACYMQKTDIKFD LYSITKEMEKQIGYEFDFAREAEAMHRIRQFLYENNKKSPVLVPRVLKDIVTRRVLVMEYMDGIPILNLGDEMGKRGINPGGKIAAAAKLNILESLTLAY GQMILKSGFFHADPHPGNILICKGSQAWVILDIFLPVGNVALLDYGQVKDLPDDLRLGYAELVLAIADNDPLGAKQSYKKLGIKTLSNCGADEDREMLRL AQTMFDSKLPPGVEMLQPFSDDSSLKKLSVQAFPEELFSILRTVHLLRGLSVGLGLNYSCAEQWRPIAEEALYGAGRLKDFPGLCQGSVNTLLNVALGSR WRPEDSSSKTWILAEIISQEYMNLANIMSSARLVMAEFTHPPTIIAR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G24810			Protein kinase superfamily pro...		Lus10032628 [exp]	0	1
AT5G46400		ATPRP39-2 ,AT P...	Tetratricopeptide repeat (TPR)...		Lus10025377 [exp]	5.0	0.8163
AT2G36810			ARM repeat superfamily protein...		Lus10023895 [exp]	8.0	0.7980
AT1G65070			DNA mismatch repair protein Mu...		Lus10018187 [exp]	9.2	0.7775
AT4G33470		HDA14, ATHDA14	histone deacetylase 14 (.1)		Lus10012713 [exp]	18.4	0.7717
AT2G36810			ARM repeat superfamily protein...		Lus10014405 [exp]	19.7	0.7588
AT5G54090			DNA mismatch repair protein Mu...		Lus10032917 [exp]	23.2	0.7749
AT5G29000	GARP	PHL1	PHR1-like 1, Homeodomain-like ...		Lus10032778 [exp]	24.5	0.7575
AT3G49142			Tetratricopeptide repeat (TPR)...		Lus10014746 [exp]	25.3	0.7279
AT5G46390			Peptidase S41 family protein (...		Lus10004601 [exp]	26.1	0.7658
					Lus10008068 [exp]	28.1	0.7240

Compare expression of checked genes

Lus10032628 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.