Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G55040 407 / 1e-127 DNA-binding bromodomain-containing protein (.1.2) AT1G76380 192 / 4e-52 DNA-binding bromodomain-containing protein (.1.2.3) AT1G20670 140 / 3e-34 DNA-binding bromodomain-containing protein (.1) AT3G01770 64 / 2e-10 ATBET10 bromodomain and extraterminal domain protein 10 (.1) AT2G34900 59 / 4e-09 GTE1, GTE01, IMB1 IMBIBITION-INDUCIBLE 1, GLOBAL TRANSCRIPTION FACTOR GROUP E1, Transcription factor GTE6 (.1.2) AT3G27260 59 / 2e-08 GTE8 global transcription factor group E8 (.1.2) AT5G46550 58 / 2e-08 DNA-binding bromodomain-containing protein (.1) AT5G14270 58 / 3e-08 ATBET9 bromodomain and extraterminal domain protein 9 (.1.2) AT1G17790 56 / 1e-07 DNA-binding bromodomain-containing protein (.1) AT3G52280 55 / 2e-07 GTE6 general transcription factor group E6 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10043121 [exp] 1213 / 0 AT5G55040 533 / 9e-176 DNA-binding bromodomain-containing protein (.1.2) Lus10013220 [exp] 209 / 4e-57 AT1G20670 431 / 5e-143 DNA-binding bromodomain-containing protein (.1) Lus10030739 [exp] 203 / 2e-55 AT1G20670 418 / 4e-138 DNA-binding bromodomain-containing protein (.1) Lus10022999 [exp] 196 / 1e-53 AT1G20670 316 / 2e-100 DNA-binding bromodomain-containing protein (.1) Lus10001391 [exp] 192 / 2e-52 AT1G20670 306 / 1e-96 DNA-binding bromodomain-containing protein (.1) Lus10018900 [exp] 61 / 2e-09 AT2G34900 254 / 2e-84 IMBIBITION-INDUCIBLE 1, GLOBAL TRANSCRIPTION FACTOR GROUP E1, Transcription factor GTE6 (.1.2) Lus10007096 [exp] 61 / 4e-09 AT1G06230 213 / 1e-62 global transcription factor group E4 (.1.2.3) Lus10020470 [exp] 59 / 7e-09 AT5G65630 173 / 3e-49 global transcription factor group E7 (.1) Lus10034067 [exp] 60 / 8e-09 AT1G06230 304 / 7e-95 global transcription factor group E4 (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G206200 [exp] 237 / 4e-66 AT1G20670 316 / 2e-97 DNA-binding bromodomain-containing protein (.1) Potri.002G009100 [exp] 225 / 2e-62 AT1G20670 449 / 2e-149 DNA-binding bromodomain-containing protein (.1) Potri.009G167500 [exp] 223 / 3e-61 AT1G20670 316 / 1e-97 DNA-binding bromodomain-containing protein (.1) Potri.005G252200 [exp] 210 / 4e-57 AT1G20670 432 / 2e-142 DNA-binding bromodomain-containing protein (.1) Potri.016G141400 [exp] 112 / 3e-25 AT1G20670 142 / 4e-35 DNA-binding bromodomain-containing protein (.1) Potri.019G132601 [exp] 105 / 3e-23 AT1G20670 137 / 1e-33 DNA-binding bromodomain-containing protein (.1) Potri.006G112000 [exp] 105 / 7e-23 AT1G20670 142 / 4e-35 DNA-binding bromodomain-containing protein (.1) Potri.005G217400 [exp] 66 / 7e-11 AT3G54610 707 / 0.0 HISTONE ACETYLTRANSFERASE 1, general control non-repressible 5, BIG TOP, histone acetyltransferase of the GNAT family 1 (.1) Potri.002G045900 [exp] 65 / 2e-10 AT3G54610 718 / 0.0 HISTONE ACETYLTRANSFERASE 1, general control non-repressible 5, BIG TOP, histone acetyltransferase of the GNAT family 1 (.1) Potri.001G355300 [exp] 62 / 2e-09 AT5G46550 201 / 5e-58 DNA-binding bromodomain-containing protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00439 [flax] [poplar] Bromodomain Bromodomain
Representative CDS sequence Show only first row Show all	>Lus10032629 pacid=23146256 polypeptide=Lus10032629 locus=Lus10032629.g ID=Lus10032629.BGIv1.0 annot-version=v1.0 ATGGGCCAGATCGTGAAGGGGAAGAAGAAAGGAAGGCCATCCAAGGCAGATCTAGCCCGTCGAGCTGCCTCCGGTGCTTCTCCTGCCGCCTCCGAACGCC GCCGCAGCCTCCGCCTTTCCCCTGCCGCTTCCGAACGACGCCGCAGCCTCCGTCGCCGGAATGTCAGGTACAACAACTTCATCGACATCGACGATTACCT GGATGACTTCGAGGAGTACGACCAGCCTGAGGATGAGGAAGACGAGGCTGAGGCCGAGGAAGAAGAGGACGACGATGAAGAAGATGATGACGAGGATGAA GATGAGAGGAGGAAACAGAAGAAACTCAAGCTCGTGTCTCTCAAACTCAACAGCCAAAGTCAAACCCGCCGCCGTCGCCGCCGCCACAACAACAACGGCA GGCCGGCGCGTGGAGGTCACTCTCGCAATGAGGCTGGAATCACCTCTGCTTCTGAAGACGATGACGAGGATGAAGGGAGCGGGAGGAAGCAGCAAACGAA GAAGAAGAGGAGGAGAATCAACGGCGACGGCGGCCGTGAGAGTGAAGCTGAGGAAGTCGGGAGTGAGAATGACGGTGGAAATGACGGAGAGGAAGAGGAA GAAGAGGAGATTGATCCAGAGGAAACGGAAAGGAAATCCGATGGTAAAGGGCAGCAGCAAGACTCAGAGCCAGGGACGCCGCCTGATCGTCTGGATTCTT ATCCCTTGCCGGACAAGAAAGTGCTGGAGTTGGTACTGGACAAGCTTCAAAAGAAGGATACATATGGTGTTTACTCTGAACCAGTGGATCTCGAGGGGCT TCCCGATTATCTCGATACGATTGATCAGCCAATGGACTTTGCCACTGTACGGACAAAGCTCGGGAATGGCTCTTACGCCACGTTAGAGCAATTTGAGAGT GATGTATTTCTAATTTGCTCCAATGCAATGAAATATAATTCATCAGACACAATTTACTATAGACAGGCACGTGCCATCCAAGAATTGGCAACAAAAAAGT TTGAAAAGATAAGAGTAGCAATTGAACGGTCAGAGAAGGAACAGAAGTCTGAACAGAAAACAAAGTCCAACACCTTGGCTAAAAAGCAGATGACGAAGCC TTTCAACCGGACCATACAAGACAATGCCGGGTCTGATTTTTCATCAGGTGCAACTCTTGCCAATGCTGGTCAGGTCCAGAATGGTTCCAGTGTAGAGATA CTTCCAGAGAACAACTTATCTCTTGCTGATAATCACATAAAGAAAGTTGAAGAGCTATCATCAGGGAGGGGTCCTTCGTTCAAGAATGGGAAGAAACCGC CTGTCTCCGATGACTACAGACGTGCAACATATAGCTCATGCAGTCAACCTGTTGAGGGACCAGACACAATATTCACGACCTTTGAAGATGAACTGAGGCA TCTGATTGCTGTTGGGCTTCATGCAGAACATTTTTACTCAAGGAGCGTGGCTCGCTTTGCTGCAAATCTAGGACCAGTAGCTTGGAAGGTGGCATCAAAA AGGATTGAGCAGGCTTTACCTCCTGGTTGCAAATATGGCAGAGGATGGGTGGCAGAATATGAGCCACCTACAACCCCGCTAATAATGTTTGCTCCGAAAT ACGACGTTTTGTTTCCCAAGGTAAAAGCATTTGTTGATGAACAAAAGGAGGATATAGCGGAAGCCAAGGAACATCCAGCGCAAAAAAATGTTTCAGAAGG AAAGCATAGTGTGTTCCGTCCAACCAGTGTGCTAGCCTCAGAAGTACACAACTCATTGTTGCCCCCTACAGGAACTAAACCGATTCTACAGAAAACTATG TCGCCAATGAACAATTCTGAGACTCGGAGTAAGACTTCCAAGCAGGTTGAATTGAATTTGCCTCCTTCAATGCATCTGAACAATGAAGCTGTTAGAGAAA AGCAAATGTCCATTAATTCAGAAATGGCAGCTTCAAAGGTGAGAGAAGTGGCGAGATCAGAAGGTCTAAAGCCAAGGGAAGTGTCTAAGCAACTGGACAA TAACGGTAATAGTCCCAGAGTGTTGCAGGATGGGAATACCACTAGCAGTTTCGCGAGTAGTAGACCGGTGATTGCATCATGTAATGGTTTTAACACAATG GCTCAAGTGGGAAGTAACCAAATGGTACGAGGAGCTGCATATTTCCCTCAAGTACAAGGACAGGTTTTCACAGACCCAGTGGAGGCAATGAGAAAATCAG CTGAAATGGTTCGAAATCAGCAGAAACCTTCAAGTCAGCCCGCAGGTGAGAATAATACACCAAGGAGTGACTCTAGCAACAATGCAGCTGTTGCTGCTGC CCGAGCATGGATGTCGGTAGGTGCCGGTAACTTTAAACCTCCGATTGAGAGTAGTACTAACCCTAAAGGAGGTCAGATCCCGGCCGAGTACAACCCTGCA TGGCAACTCACTCCACAATTTCCACGGGTGCAAGGACAGTACCCGGTACAGTACCAGTCTGAGAAGAACAACTTTCCATTTCAAGCATTCATGAGACCGC CTTTCCTCGGAGGAGCTGAGGCACAGTTGCAAGGCAGGCCGATGGTGTTCCCTCCTCAGTTAGTAGGTGCTTCCGACATGTCTAGGTTGCAGATGATCTC CCCTTGGAACGGCAGCGGTCAAAGTCAACAGCAGCAGCAGCCTCAGTTTCAGCAGAAGCAAAAACATGACACACTCCCACCAGACTTGAACATTGGTTTC CAGTCTCCTGGATCTCCTGCGAAGCAACAATCTTCAGGTGTTATGGTTGATTCGCAACAGCCTGACCTGGCATTACAACTCTAA
AA sequence Show only first row Show all	>Lus10032629 pacid=23146256 polypeptide=Lus10032629 locus=Lus10032629.g ID=Lus10032629.BGIv1.0 annot-version=v1.0 MGQIVKGKKKGRPSKADLARRAASGASPAASERRRSLRLSPAASERRRSLRRRNVRYNNFIDIDDYLDDFEEYDQPEDEEDEAEAEEEEDDDEEDDDEDE DERRKQKKLKLVSLKLNSQSQTRRRRRRHNNNGRPARGGHSRNEAGITSASEDDDEDEGSGRKQQTKKKRRRINGDGGRESEAEEVGSENDGGNDGEEEE EEEIDPEETERKSDGKGQQQDSEPGTPPDRLDSYPLPDKKVLELVLDKLQKKDTYGVYSEPVDLEGLPDYLDTIDQPMDFATVRTKLGNGSYATLEQFES DVFLICSNAMKYNSSDTIYYRQARAIQELATKKFEKIRVAIERSEKEQKSEQKTKSNTLAKKQMTKPFNRTIQDNAGSDFSSGATLANAGQVQNGSSVEI LPENNLSLADNHIKKVEELSSGRGPSFKNGKKPPVSDDYRRATYSSCSQPVEGPDTIFTTFEDELRHLIAVGLHAEHFYSRSVARFAANLGPVAWKVASK RIEQALPPGCKYGRGWVAEYEPPTTPLIMFAPKYDVLFPKVKAFVDEQKEDIAEAKEHPAQKNVSEGKHSVFRPTSVLASEVHNSLLPPTGTKPILQKTM SPMNNSETRSKTSKQVELNLPPSMHLNNEAVREKQMSINSEMAASKVREVARSEGLKPREVSKQLDNNGNSPRVLQDGNTTSSFASSRPVIASCNGFNTM AQVGSNQMVRGAAYFPQVQGQVFTDPVEAMRKSAEMVRNQQKPSSQPAGENNTPRSDSSNNAAVAAARAWMSVGAGNFKPPIESSTNPKGGQIPAEYNPA WQLTPQFPRVQGQYPVQYQSEKNNFPFQAFMRPPFLGGAEAQLQGRPMVFPPQLVGASDMSRLQMISPWNGSGQSQQQQQPQFQQKQKHDTLPPDLNIGF QSPGSPAKQQSSGVMVDSQQPDLALQL

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G55040			DNA-binding bromodomain-contai...		Lus10032629 [exp]	0	1
AT2G33835	C3HZnF	FES1	FRIGIDA-ESSENTIAL 1, Zinc fing...		Lus10015319 [exp]	1.0	0.8227
AT3G56690		CIP111	Cam interacting protein 111 (....		Lus10002639 [exp]	4.5	0.8127
AT4G30935	WRKY	ATWRKY32, WRKY3...	WRKY DNA-binding protein 32 (....		Lus10036268 [exp]	10.0	0.8124
AT5G66820			unknown protein		Lus10009344 [exp]	18.3	0.7872
AT2G29210			splicing factor PWI domain-con...		Lus10001561 [exp]	18.9	0.8174
AT4G15410		PUX5, ATB' GAMM...	serine/threonine protein phosp...		Lus10030005 [exp]	19.4	0.8017
AT2G42200	SBP	SPL9, AtSPL9	squamosa promoter binding prot...		Lus10016275 [exp]	21.0	0.8151
AT1G46264	HSF	SCZ, AT-HSFB4	SCHIZORIZA, heat shock transcr...		Lus10042646 [exp]	26.6	0.7910
AT5G62090		SLK2	SEUSS-like 2 (.1.2)		Lus10015002 [exp]	27.2	0.7843
AT3G22520			unknown protein		Lus10006124 [exp]	32.2	0.7695

Compare expression of checked genes

Lus10032629 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.