Plant FIBer expression Database

Lus10032630 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT2G43330 173 / 2e-50 ATINT1 inositol transporter 1 (.1)
AT2G35740 162 / 2e-45 ATINT3 nositol transporter 3 (.1)
AT4G16480 159 / 1e-44 ATINT4 inositol transporter 4 (.1)
AT1G30220 154 / 8e-43 ATINT2 ARABIDOPSIS THALIANA INOSITOL TRANSPORTER 2, inositol transporter 2 (.1)
AT5G59250 88 / 2e-19 Major facilitator superfamily protein (.1)
AT4G35300 85 / 3e-18 TMT2 tonoplast monosaccharide transporter2 (.1.2.3.4.5)
AT3G51490 79 / 4e-16 TMT3 tonoplast monosaccharide transporter3 (.1.2)
AT3G18830 77 / 9e-16 ATPMT5, AtPLT5 ARABIDOPSIS THALIANA POLYOL/MONOSACCHARIDE TRANSPORTER 5, POLYOL TRANSPORTER 5, polyol/monosaccharide transporter 5 (.1)
AT2G20780 77 / 1e-15 AtPLT4 Major facilitator superfamily protein (.1)
AT1G20840 76 / 3e-15 AtTMT1, TMT1 tonoplast monosaccharide transporter1 (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10043120
[exp]
216 / 2e-67 AT2G43330 593 / 0.0 inositol transporter 1 (.1)
Lus10025565
[exp]
198 / 1e-59 AT2G43330 768 / 0.0 inositol transporter 1 (.1)
Lus10027026
[exp]
197 / 1e-59 AT2G43330 769 / 0.0 inositol transporter 1 (.1)
Lus10017559
[exp]
165 / 4e-47 AT2G35740 669 / 0.0 nositol transporter 3 (.1)
Lus10010501
[exp]
162 / 1e-45 AT4G16480 755 / 0.0 inositol transporter 4 (.1)
Lus10028118
[exp]
162 / 2e-45 AT1G30220 893 / 0.0 ARABIDOPSIS THALIANA INOSITOL TRANSPORTER 2, inositol transporter 2 (.1)
Lus10042820
[exp]
161 / 3e-45 AT1G30220 890 / 0.0 ARABIDOPSIS THALIANA INOSITOL TRANSPORTER 2, inositol transporter 2 (.1)
Lus10010500
[exp]
160 / 7e-45 AT4G16480 823 / 0.0 inositol transporter 4 (.1)
Lus10017561
[exp]
160 / 8e-45 AT4G16480 820 / 0.0 inositol transporter 4 (.1)
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.007G126800
[exp]
192 / 9e-58 AT2G43330 710 / 0.0 inositol transporter 1 (.1)
Potri.017G032200
[exp]
184 / 2e-54 AT2G43330 743 / 0.0 inositol transporter 1 (.1)
Potri.016G010600
[exp]
168 / 7e-48 AT4G16480 825 / 0.0 inositol transporter 4 (.1)
Potri.006G015200
[exp]
165 / 7e-47 AT4G16480 811 / 0.0 inositol transporter 4 (.1)
Potri.004G133340
[exp]
152 / 8e-45 AT1G30220 354 / 6e-120 ARABIDOPSIS THALIANA INOSITOL TRANSPORTER 2, inositol transporter 2 (.1)
Potri.006G015300
[exp]
157 / 4e-44 AT4G16480 788 / 0.0 inositol transporter 4 (.1)
Potri.004G039100
[exp]
87 / 4e-19 AT2G20780 647 / 0.0 Major facilitator superfamily protein (.1)
Potri.013G135200
[exp]
86 / 1e-18 AT2G20780 747 / 0.0 Major facilitator superfamily protein (.1)
Potri.005G098900
[exp]
81 / 5e-17 AT4G35300 759 / 0.0 tonoplast monosaccharide transporter2 (.1.2.3.4.5)
Potri.002G006200
[exp]
81 / 5e-17 AT4G35300 904 / 0.0 tonoplast monosaccharide transporter2 (.1.2.3.4.5)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0015 MFS PF00083 Sugar_tr Sugar (and other) transporter
Representative CDS sequence
>Lus10032630 pacid=23146374 polypeptide=Lus10032630 locus=Lus10032630.g ID=Lus10032630.BGIv1.0 annot-version=v1.0
ATGACTCATCTTAATTTTAAACAAGCCAAATCTGAATTAAGGCATGTTCGGCTCTCGAGCTCAACTCGCGAGCCAACGTGCTTGAGCTCGAGAGCCAACT
CAAATACTAACTCGATAATATGGCTCGAACACTCCATTGGTGTTGATATGTTGGCTGATGATGAGATCGATGAGCAGGCAGCAGCCAGAAGTCTCATTGC
TGGAATCAGCGGTCTTCTTTTGGCTACGATACAGGAAACAATTGTTAGCATGGCGGTGGCGGGTGCGATGGTAGGAGCGGCATGCGGAGGATGGATTAAT
GATGAATACGGACGCAAGAGAGCTACGCTTGCTGCTGATGTGGTGTTCACTTGTGGATCAATTGTTATGGCTGCTGCACCAGATCCGTACGTGCTCATCC
TGGGACGCCTTTTAGTTGGATTTGGTGTCGAAATGGCATCAGTCACTGCTCCTCTGTATATCGCCGAAGCATCTCCGTCAGAAGTTAGGGGAAGTTTAGT
CAGCACAAATGTTCTAATGATCACTGCTGGACAATTTCTTTCCTATCTTGTAAATCTCGCCTTTACCCAGATTCCAGGAACCTGGCGGTGGATGCTAGGG
GTTTGGCCCAGAGCTTCCTCTCCATTGCTCGTGTTTCAGGGGGCTGCTGCCACTTTCCTCATCCTCGCGGCTTTAGCTGTAGCTGCGGTCGGGTTCGTTG
TTGTGTTTGTGCCTGAAACCAAAGGTTTGACGATTGTAGAAGTGGAACGGATATGGAAGGAACGAGCCTGGGGAAGTGATGGGTACAACTCGCCGGAAAG
CCTTCCAAATTTTATTTCATATAGTTTAACGACATTTTTAGAACCTCTGTCCAAATTTGGGGCTCGTTTGATATAG
AA sequence
>Lus10032630 pacid=23146374 polypeptide=Lus10032630 locus=Lus10032630.g ID=Lus10032630.BGIv1.0 annot-version=v1.0
MTHLNFKQAKSELRHVRLSSSTREPTCLSSRANSNTNSIIWLEHSIGVDMLADDEIDEQAAARSLIAGISGLLLATIQETIVSMAVAGAMVGAACGGWIN
DEYGRKRATLAADVVFTCGSIVMAAAPDPYVLILGRLLVGFGVEMASVTAPLYIAEASPSEVRGSLVSTNVLMITAGQFLSYLVNLAFTQIPGTWRWMLG
VWPRASSPLLVFQGAAATFLILAALAVAAVGFVVVFVPETKGLTIVEVERIWKERAWGSDGYNSPESLPNFISYSLTTFLEPLSKFGARLI

DESeq2's median of ratios [FLAX]

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Coexpressed genes

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Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT2G43330 ATINT1 inositol transporter 1 (.1) Lus10032630
[exp]
0 1

Lus10032630 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.