Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G55060 643 / 0 unknown protein AT5G58510 142 / 2e-35 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10043118 [exp] 1096 / 0 AT5G55060 630 / 0.0 unknown protein Lus10040061 [exp] 895 / 0 AT5G55060 753 / 0.0 unknown protein Lus10000118 [exp] 467 / 1e-163 AT5G55060 319 / 1e-106 unknown protein Lus10021546 [exp] 248 / 1e-77 AT5G55060 170 / 3e-48 unknown protein Lus10031287 [exp] 149 / 2e-37 AT5G58510 1122 / 0.0 unknown protein Lus10031857 [exp] 100 / 7e-23 AT5G58510 468 / 2e-158 unknown protein Lus10020371 [exp] 63 / 3e-10 AT4G26680 241 / 3e-75 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Lus10031851 [exp] 43 / 0.0004 AT5G58510 109 / 2e-27 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G089300 [exp] 725 / 0 AT5G55060 770 / 0.0 unknown protein Potri.009G076000 [exp] 127 / 2e-30 AT5G58510 1237 / 0.0 unknown protein Potri.001G280832 [exp] 52 / 1e-07 AT5G58510 164 / 3e-47 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10032631 pacid=23146431 polypeptide=Lus10032631 locus=Lus10032631.g ID=Lus10032631.BGIv1.0 annot-version=v1.0 ATGGCTCTCGCATTTTATGACGAAAATTTGTACATACTGAACAAGAAAAATGATGCCGAGATCAAGGCTTCACAAGTACCTTATATAGCAGAAAGATTAT CTGCCACTAGTTCAGACAGCATTCCTCCGGCATCTGTCATGAAGCAATTAGCTAGCGCTATTGACACGGGGAAGAAGTACAAGTCAATAAAAGATCTTCT GGTGGTCTCTTCTGGAAGTTCATCACCAATCAAGGAGAGGACAGGCTTAAGCCTTGCTGCTGTAAAGTCATTTGTACTTCGTGACAAGGATGATAAGCTT GCATCTGAATTTGAGAACCACGAGAAACTTCTGTTCATCATGCAGTCATTGTTCAGTGCAGAGGGGGACTTTCTCAGGAGGAACGCTTGCTGTAGCATGG AGTCATCAACACTGATTAAAGACATTCATGGTGCACCTCCAGACAGCCTCCTTGTAAAGCTATCTGAAGTAATTGGAAGCTTTAAATCATTGCAGAATAT GGCCACTTTTTGGTTCAAAATTGTTGCTGAACTGAGAAGGCTCTGGTCCGAAGAACTCCATGTGCCTGGCATCCCTCTGGATGAGCTTCCAGATCTTCAT TCGTGCCTTCTATACCAGCAGTTACAGGTTATCAACTGCTGTGTTTCGAGGAAAAAGCGCCATGCGCTTGCTTCTGAATCACTGGAAGTTATATTAAAGG ATGCGAGTGTAATTTCTGAAGAATCTTCTAAAGGTGTAAATGTCCCCGGTCATTTATTATATGCCAGAACGAGTAGTGGAGAACTTGTTCTTCGCTTAGG TGCAGATTCTAAGACTCCTAACCTGCTCATGTTGGAAACTGGTGAACCAATATTCTCTCCTGTCCCTCAGGAGCCGCCTTTGCTTACCGAAGATGTTATA AAAGAAAATGAAGAATTTATTCTCCAAACTGGGAGTGTTGGTGCAGGGTGTTCTCAGCTACTCTCTGACATGCAAGGTTTCAAGGCTGCCAATCCTGGGT GCATATTAGAAGATTTTGTGAGATGGCATTCTCCTCCTGACTGGACAAGCAGTGAAGAAACTGACGAGGCTAACGAGTCTTCTTCAGCTAGAGACGCTTC ACCTTCAACAAGAGGTTATCTAAGTAGCCGAATGCAGAAAGAAGGAAACTTGTGGCGTGAACTATGGGAAACGTCTAAGCCAATACCAGCGGTTAAACAA GCTCCCCTTTTTGACGAGGATTTGGCTGTCATGTATATGGCTGGTTGGAGTGAGGGTATTTTGAATCACATGGAGAACATCAACCCATCCATACTTTTTG AACAGTTCTTCATTTCGCTACTCTGTCTGGCAACTCTAATGGCGGAGGCAAAACTTTCTAGCAACGATGATTTATCAAAGCTGTTTTACGAGTGTAAAGA TTACATTGTTGTCACGTGCCAAGGAATCCCATGGAGTGATAAAAAGGACGACCTTTGTCATGTTTACGAGACAATGGAGACTATGTTACTGAACCCCAAC GAAGTTGTCAAGACAATAAAGCTTGCCGATGACGCCACCACATCTGGGTCTGAAACCAAGCACACCAGCTTCCTGAAACTGGGTATAAAGTTCGGCAGGA AGAAGAGAAAACCATTGCCAAGATGCGAAAGCGGCGGCTCTTCGGAGGAAAGCCCCACGATACAGCAGCAGCAGCCTTTCTCGAATGATTTCTTCGAGGG AAAGTCGCCAATGTTCTCGAAGAACAAGCCTCCTAAGCCAGGGACTGCATCACCCGAAAAGACTCCTCCCAACGAGGATAGTGACTGGACACTCGTTTAA
AA sequence Show only first row Show all	>Lus10032631 pacid=23146431 polypeptide=Lus10032631 locus=Lus10032631.g ID=Lus10032631.BGIv1.0 annot-version=v1.0 MALAFYDENLYILNKKNDAEIKASQVPYIAERLSATSSDSIPPASVMKQLASAIDTGKKYKSIKDLLVVSSGSSSPIKERTGLSLAAVKSFVLRDKDDKL ASEFENHEKLLFIMQSLFSAEGDFLRRNACCSMESSTLIKDIHGAPPDSLLVKLSEVIGSFKSLQNMATFWFKIVAELRRLWSEELHVPGIPLDELPDLH SCLLYQQLQVINCCVSRKKRHALASESLEVILKDASVISEESSKGVNVPGHLLYARTSSGELVLRLGADSKTPNLLMLETGEPIFSPVPQEPPLLTEDVI KENEEFILQTGSVGAGCSQLLSDMQGFKAANPGCILEDFVRWHSPPDWTSSEETDEANESSSARDASPSTRGYLSSRMQKEGNLWRELWETSKPIPAVKQ APLFDEDLAVMYMAGWSEGILNHMENINPSILFEQFFISLLCLATLMAEAKLSSNDDLSKLFYECKDYIVVTCQGIPWSDKKDDLCHVYETMETMLLNPN EVVKTIKLADDATTSGSETKHTSFLKLGIKFGRKKRKPLPRCESGGSSEESPTIQQQQPFSNDFFEGKSPMFSKNKPPKPGTASPEKTPPNEDSDWTLV

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G55060			unknown protein		Lus10032631 [exp]	0	1
AT1G31120		KUP10	K+ uptake permease 10, K+ upta...		Lus10038362 [exp]	2.6	0.9082
AT2G03270			DNA-binding protein, putative ...		Lus10026309 [exp]	4.9	0.9040
AT2G30140			UDP-Glycosyltransferase superf...		Lus10026393 [exp]	14.9	0.8343
AT3G10550		MTM1, AtMTM1	Arabidopsis thaliana myotubula...		Lus10038641 [exp]	21.0	0.8525
AT3G10150		ATPAP16, PAP16	purple acid phosphatase 16 (.1...		Lus10018030 [exp]	21.7	0.8827
AT2G30140			UDP-Glycosyltransferase superf...		Lus10026394 [exp]	22.2	0.8876
AT3G07020		UGT80A2, SGT	UDP-glucosyl transferase 80A2,...		Lus10024544 [exp]	24.0	0.8835
AT4G30310			FGGY family of carbohydrate ki...		Lus10006975 [exp]	25.9	0.8640
AT3G02875		ILR1	IAA-LEUCINE RESISTANT 1, Pepti...		Lus10021321 [exp]	27.3	0.8847
AT3G06810		IBR3	IBA-RESPONSE 3, acyl-CoA dehyd...		Lus10020908 [exp]	30.1	0.8864

Compare expression of checked genes

Lus10032631 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.