Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G26910 518 / 0 Dihydrolipoamide succinyltransferase (.1.2.3) AT5G55070 495 / 2e-173 Dihydrolipoamide succinyltransferase (.1) AT3G52200 139 / 3e-35 LTA3 Dihydrolipoamide acetyltransferase, long form protein (.1.2) AT1G54220 130 / 1e-32 Dihydrolipoamide acetyltransferase, long form protein (.1.2) AT3G13930 126 / 3e-31 Dihydrolipoamide acetyltransferase, long form protein (.1) AT3G06850 87 / 4e-18 DIN3, LTA1, BCE2 DARK INDUCIBLE 3, 2-oxoacid dehydrogenases acyltransferase family protein (.1.2) AT3G25860 82 / 2e-16 PLE2, LTA2 PLASTID E2 SUBUNIT OF PYRUVATE DECARBOXYLASE, 2-oxoacid dehydrogenases acyltransferase family protein (.1) AT1G34430 71 / 5e-13 EMB3003 embryo defective 3003, 2-oxoacid dehydrogenases acyltransferase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10043117 [exp] 726 / 0 AT4G26910 653 / 0.0 Dihydrolipoamide succinyltransferase (.1.2.3) Lus10043116 [exp] 684 / 0 AT4G26910 638 / 0.0 Dihydrolipoamide succinyltransferase (.1.2.3) Lus10032633 [exp] 211 / 1e-65 AT4G26910 229 / 2e-74 Dihydrolipoamide succinyltransferase (.1.2.3) Lus10008412 [exp] 130 / 3e-32 AT3G52200 725 / 0.0 Dihydrolipoamide acetyltransferase, long form protein (.1.2) Lus10001967 [exp] 129 / 8e-32 AT3G52200 717 / 0.0 Dihydrolipoamide acetyltransferase, long form protein (.1.2) Lus10006877 [exp] 114 / 3e-27 AT1G54220 704 / 0.0 Dihydrolipoamide acetyltransferase, long form protein (.1.2) Lus10037617 [exp] 111 / 6e-26 AT1G54220 716 / 0.0 Dihydrolipoamide acetyltransferase, long form protein (.1.2) Lus10037492 [exp] 99 / 5e-22 AT3G06850 565 / 0.0 DARK INDUCIBLE 3, 2-oxoacid dehydrogenases acyltransferase family protein (.1.2) Lus10006498 [exp] 93 / 6e-20 AT3G06850 558 / 0.0 DARK INDUCIBLE 3, 2-oxoacid dehydrogenases acyltransferase family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G357000 [exp] 576 / 0 AT4G26910 624 / 0.0 Dihydrolipoamide succinyltransferase (.1.2.3) Potri.011G089200 [exp] 572 / 0 AT5G55070 562 / 0.0 Dihydrolipoamide succinyltransferase (.1) Potri.014G154700 [exp] 505 / 2e-177 AT4G26910 520 / 0.0 Dihydrolipoamide succinyltransferase (.1.2.3) Potri.008G027400 [exp] 143 / 7e-37 AT3G52200 754 / 0.0 Dihydrolipoamide acetyltransferase, long form protein (.1.2) Potri.003G043900 [exp] 135 / 3e-34 AT3G13930 771 / 0.0 Dihydrolipoamide acetyltransferase, long form protein (.1) Potri.001G198000 [exp] 130 / 9e-33 AT3G13930 724 / 0.0 Dihydrolipoamide acetyltransferase, long form protein (.1) Potri.010G011300 [exp] 90 / 4e-19 AT3G06850 566 / 0.0 DARK INDUCIBLE 3, 2-oxoacid dehydrogenases acyltransferase family protein (.1.2) Potri.008G219700 [exp] 81 / 2e-16 AT3G06850 518 / 0.0 DARK INDUCIBLE 3, 2-oxoacid dehydrogenases acyltransferase family protein (.1.2) Potri.013G114300 [exp] 81 / 4e-16 AT1G34430 549 / 0.0 embryo defective 3003, 2-oxoacid dehydrogenases acyltransferase family protein (.1) Potri.010G126600 [exp] 73 / 1e-13 AT3G25860 470 / 2e-163 PLASTID E2 SUBUNIT OF PYRUVATE DECARBOXYLASE, 2-oxoacid dehydrogenases acyltransferase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0105 [flax] [poplar] Hybrid PF00364 [flax] [poplar] Biotin_lipoyl Biotin-requiring enzyme CL0149 [flax] [poplar] CoA-acyltrans PF00198 [flax] [poplar] 2-oxoacid_dh 2-oxoacid dehydrogenases acyltransferase (catalytic domain)
Representative CDS sequence Show only first row Show all	>Lus10032632 pacid=23146255 polypeptide=Lus10032632 locus=Lus10032632.g ID=Lus10032632.BGIv1.0 annot-version=v1.0 ATGATGATCGGCGTTCTCAGGAGGAGACTTGCTACGTGCAGTTCCTCTTCTTCTTCGATATTGAAGCAGTCTCTGCAGAATCTTCGACCTGCAGCTGCCT CTGCTGCAGAGACTGAGGTTTTGCTTAATCGAAAACGACTTACACATGTCCGGAACTATAGTCGCCTTGTCTTGCCAGAAGATTTGGCTCATGCTGTTGT ACCTTTCATGGGTGAATCCATTACTGACGGCACTCTAGCTACATTCCTAAAGAAACCTGGTGACAGGGTTGAAGTTGATGAGCCTATTGCACAAATTGAG ACAGATAAGGTGACAATTGATGTTGCTAGTCCAGAAGCAGGTGTGATAAAAGAGTTTGTAGCCAAAGAAGGAGACACACTCTTGATCAGAAGTAAAACTT CCACCGGAATGCTGATAATATCCATCCTTGCCCAGGTGACAATTGATGTTGCTAGTCCAGAAGCAGGTGTGATAAAAGAGTTTGTAGCCAAAGAAGGAGA CACTGTGGAGCCAGGAACAATGGTTGCTATCATTTCGAAGTCTGGGGAAGGGGTATCTCATGTTGCTCCATCTGAAAAATTACCAGAGACTGCTGCGCCT AAGCCATCTGAAAAGAAAGAGGAGGTAAAACAAACATCAAAACCTGAGGCTTCTCCTGTTACAGAGAAGCCCAAGAAATCAACATCAGCTGCATCACCTC CGAGACAAGCTGCTACAGAGCCTCAACTTCCTCCCAAGGATAGAGAAAGACGAGTTCCTATGACCAGACTTCGCAAAAGAGTTGCTACTCGGTTGAAGGA CTCGCAGAACACATTTGCCCTGCTGACAACATTCAATGAAGTTGATATTGATGCTAGGCTGGAGATAATAATGGAACTCCAGCATGGTGTGAAGTTGGGA CTTATGTCTGGTTTTATCAAGGCAGCTGTCTCTGCGCTCCAGCAGCAGCCTGTTATAAATGCCGTGATCGATGGGGATGATATTATATATAGGGATTACA TAGACATTAGTATAGCAGTTGGAACTCCAAAGGGACTTGTTGTGCCTGTAATTCGCAATGCTGAGAAGATGAATTTTGCAGATATTGAGAAGGAGATCAA CACCCTTGCTAAGAAGGCTAATGATGGGACTATTTCAATAGATGAGATGGCAGGAGGTTCATTTACGATATCGAACGGTGGTGTCTATGGAAGCCTTTTA AGTACTCCGATCATCAACCCTCCTCAGTCTGCGATATTGGGAATGCACTCAATAGTGAGCCGGCCAATGGTAGTTGGAGGCAACGTGGTGCCAAGGCCAA TGATGTACATTGCTCTGACCTATGACCATAGGCTGATTGATGGGAGAGAGGCTGTTTTCTTCCTGCGCCGAATCAAGGATGTCGTCGAGGATCCTCGCAG ACTGCTTCTTGATGTTTGA
AA sequence Show only first row Show all	>Lus10032632 pacid=23146255 polypeptide=Lus10032632 locus=Lus10032632.g ID=Lus10032632.BGIv1.0 annot-version=v1.0 MMIGVLRRRLATCSSSSSSILKQSLQNLRPAAASAAETEVLLNRKRLTHVRNYSRLVLPEDLAHAVVPFMGESITDGTLATFLKKPGDRVEVDEPIAQIE TDKVTIDVASPEAGVIKEFVAKEGDTLLIRSKTSTGMLIISILAQVTIDVASPEAGVIKEFVAKEGDTVEPGTMVAIISKSGEGVSHVAPSEKLPETAAP KPSEKKEEVKQTSKPEASPVTEKPKKSTSAASPPRQAATEPQLPPKDRERRVPMTRLRKRVATRLKDSQNTFALLTTFNEVDIDARLEIIMELQHGVKLG LMSGFIKAAVSALQQQPVINAVIDGDDIIYRDYIDISIAVGTPKGLVVPVIRNAEKMNFADIEKEINTLAKKANDGTISIDEMAGGSFTISNGGVYGSLL STPIINPPQSAILGMHSIVSRPMVVGGNVVPRPMMYIALTYDHRLIDGREAVFFLRRIKDVVEDPRRLLLDV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G26910			Dihydrolipoamide succinyltrans...		Lus10032632 [exp]	0	1
AT2G40090		ATATH9	ABC2 homolog 9 (.1)		Lus10040196 [exp]	2.8	0.9215
AT2G30970		ASP1	aspartate aminotransferase 1 (...		Lus10029796 [exp]	3.3	0.9471
AT2G05710		ACO3	aconitase 3 (.1)		Lus10027165 [exp]	4.9	0.9311
AT5G65750			2-oxoglutarate dehydrogenase, ...		Lus10005962 [exp]	5.7	0.9266
AT3G52990			Pyruvate kinase family protein...		Lus10035581 [exp]	7.5	0.9297
AT4G01320		ATSTE24	Peptidase family M48 family pr...		Lus10018820 [exp]	10.4	0.8991
AT3G52990			Pyruvate kinase family protein...		Lus10008644 [exp]	10.8	0.9154
AT4G26300		EMB1027	embryo defective 1027, Arginyl...		Lus10034982 [exp]	11.5	0.9053
AT4G26910			Dihydrolipoamide succinyltrans...		Lus10032633 [exp]	13.2	0.9253
AT2G30970		ASP1	aspartate aminotransferase 1 (...		Lus10020720 [exp]	16.7	0.9227

Compare expression of checked genes

Lus10032632 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.