Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G26910 193 / 3e-60 Dihydrolipoamide succinyltransferase (.1.2.3) AT5G55070 192 / 9e-59 Dihydrolipoamide succinyltransferase (.1) AT3G13930 71 / 3e-14 Dihydrolipoamide acetyltransferase, long form protein (.1) AT3G52200 71 / 4e-14 LTA3 Dihydrolipoamide acetyltransferase, long form protein (.1.2) AT1G54220 69 / 3e-13 Dihydrolipoamide acetyltransferase, long form protein (.1.2) AT3G25860 52 / 1e-07 PLE2, LTA2 PLASTID E2 SUBUNIT OF PYRUVATE DECARBOXYLASE, 2-oxoacid dehydrogenases acyltransferase family protein (.1) AT1G34430 46 / 8e-06 EMB3003 embryo defective 3003, 2-oxoacid dehydrogenases acyltransferase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10043116 [exp] 212 / 2e-66 AT4G26910 638 / 0.0 Dihydrolipoamide succinyltransferase (.1.2.3) Lus10043117 [exp] 211 / 4e-66 AT4G26910 653 / 0.0 Dihydrolipoamide succinyltransferase (.1.2.3) Lus10032632 [exp] 211 / 5e-66 AT4G26910 560 / 0.0 Dihydrolipoamide succinyltransferase (.1.2.3) Lus10006877 [exp] 73 / 1e-14 AT1G54220 704 / 0.0 Dihydrolipoamide acetyltransferase, long form protein (.1.2) Lus10037617 [exp] 71 / 3e-14 AT1G54220 716 / 0.0 Dihydrolipoamide acetyltransferase, long form protein (.1.2) Lus10008412 [exp] 70 / 1e-13 AT3G52200 725 / 0.0 Dihydrolipoamide acetyltransferase, long form protein (.1.2) Lus10001967 [exp] 69 / 2e-13 AT3G52200 717 / 0.0 Dihydrolipoamide acetyltransferase, long form protein (.1.2) Lus10037492 [exp] 63 / 2e-11 AT3G06850 565 / 0.0 DARK INDUCIBLE 3, 2-oxoacid dehydrogenases acyltransferase family protein (.1.2) Lus10006498 [exp] 61 / 2e-10 AT3G06850 558 / 0.0 DARK INDUCIBLE 3, 2-oxoacid dehydrogenases acyltransferase family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G089200 [exp] 207 / 6e-65 AT5G55070 562 / 0.0 Dihydrolipoamide succinyltransferase (.1) Potri.001G357000 [exp] 204 / 1e-63 AT4G26910 624 / 0.0 Dihydrolipoamide succinyltransferase (.1.2.3) Potri.014G154700 [exp] 187 / 7e-57 AT4G26910 520 / 0.0 Dihydrolipoamide succinyltransferase (.1.2.3) Potri.003G043900 [exp] 74 / 4e-15 AT3G13930 771 / 0.0 Dihydrolipoamide acetyltransferase, long form protein (.1) Potri.008G027400 [exp] 72 / 2e-14 AT3G52200 754 / 0.0 Dihydrolipoamide acetyltransferase, long form protein (.1.2) Potri.001G198000 [exp] 71 / 6e-14 AT3G13930 724 / 0.0 Dihydrolipoamide acetyltransferase, long form protein (.1) Potri.010G011300 [exp] 57 / 2e-09 AT3G06850 566 / 0.0 DARK INDUCIBLE 3, 2-oxoacid dehydrogenases acyltransferase family protein (.1.2) Potri.008G219700 [exp] 56 / 4e-09 AT3G06850 518 / 0.0 DARK INDUCIBLE 3, 2-oxoacid dehydrogenases acyltransferase family protein (.1.2) Potri.010G126600 [exp] 51 / 2e-07 AT3G25860 470 / 2e-163 PLASTID E2 SUBUNIT OF PYRUVATE DECARBOXYLASE, 2-oxoacid dehydrogenases acyltransferase family protein (.1) Potri.008G119500 [exp] 49 / 1e-06 AT3G25860 464 / 5e-161 PLASTID E2 SUBUNIT OF PYRUVATE DECARBOXYLASE, 2-oxoacid dehydrogenases acyltransferase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0149 [flax] [poplar] CoA-acyltrans PF00198 [flax] [poplar] 2-oxoacid_dh 2-oxoacid dehydrogenases acyltransferase (catalytic domain)
Representative CDS sequence Show only first row Show all	>Lus10032633 pacid=23146397 polypeptide=Lus10032633 locus=Lus10032633.g ID=Lus10032633.BGIv1.0 annot-version=v1.0 ATGTTCGGCGTTCTCAGGAGGAGACTTGCTACCGGCAGTTTCTCTTCTTCTTCGATATTGAAGCAGTCTCTGCAGAATCTTCGACCTGCAGCTGCCTCTG CTGCAGACACTGAGGTTTTGCTTAATCCAAAACGACTTACACATGTCCACAACTATAGTCGCCCTGTCTTGCCAGGTTCCGTTGTTTGTTCGACACCCAA AAGGTTAGAGGCATCGATCCTATTTCTGCCTCAAATACAGTCTGAATACGCAGCTGTCTCTGGGCTCCAGCAGCAGCCTGTTGTAAATGCAGTGATCGAT GGGGATGATATTATATATAGGGATTACATAGACATTAGTATAGCAGTTGGAACTCCAAAGGGACTTGTTGTGCCAGTGATTCGCAATGCTGAGAAGATGA ATTTTGCAGATATTGAGAAGGAGATCAACACCCTTGCTAAGAAGGCTAATGATGGGACTATTTCAATAGATGAGATGGCAGGAGGTTCATTTACGATATC GAACGGTGGTGTCTATGGAAGCCTTTTAAGTACTCCGATCATCAACCCTCCTCAGTCAGCGATATTGGGAATGCACTCAATAGTGAGCCGGCCAATGGTA GTTGGGGGCTGCGGGGGGCCAAGGGCCACGGTGTACACTTCCTTGCGCCAAGGCCAATGA
AA sequence Show only first row Show all	>Lus10032633 pacid=23146397 polypeptide=Lus10032633 locus=Lus10032633.g ID=Lus10032633.BGIv1.0 annot-version=v1.0 MFGVLRRRLATGSFSSSSILKQSLQNLRPAAASAADTEVLLNPKRLTHVHNYSRPVLPGSVVCSTPKRLEASILFLPQIQSEYAAVSGLQQQPVVNAVID GDDIIYRDYIDISIAVGTPKGLVVPVIRNAEKMNFADIEKEINTLAKKANDGTISIDEMAGGSFTISNGGVYGSLLSTPIINPPQSAILGMHSIVSRPMV VGGCGGPRATVYTSLRQGQ

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G26910			Dihydrolipoamide succinyltrans...		Lus10032633 [exp]	0	1
AT4G05390		ATRFNR1	root FNR 1 (.1.2)		Lus10038538 [exp]	2.8	0.9555
AT4G26900		HISN4, HISHF, A...	HIS HF (.1)		Lus10043113 [exp]	4.2	0.9550
AT5G27620		CYCH;1	cyclin H;1 (.1)		Lus10037811 [exp]	4.6	0.9446
AT2G30970		ASP1	aspartate aminotransferase 1 (...		Lus10020720 [exp]	5.9	0.9478
AT1G32440		PKP3	plastidial pyruvate kinase 3 (...		Lus10000672 [exp]	6.0	0.9548
AT2G29690		ATHANSYNAB, ASA...	anthranilate synthase 2 (.1)		Lus10014830 [exp]	6.5	0.9222
AT1G16300		GAPCP-2	glyceraldehyde-3-phosphate deh...		Lus10000872 [exp]	7.5	0.9489
AT5G60700			glycosyltransferase family pro...		Lus10037396 [exp]	10.2	0.9387
AT1G70770			Protein of unknown function DU...		Lus10001593 [exp]	10.2	0.9440
AT1G31690			Copper amine oxidase family pr...		Lus10013356 [exp]	10.4	0.9434

Compare expression of checked genes

Lus10032633 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.