Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G31650 41 / 0.0003 SDG27, TRX1, ATX1 SET DOMAIN PROTEIN 27, homologue of trithorax (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10043114 [exp] 325 / 3e-114 AT5G27650 45 / 2e-05 Tudor/PWWP/MBT superfamily protein (.1) Lus10026725 [exp] 41 / 0.0006 AT1G05830 1272 / 0.0 SET DOMAIN PROTEIN 30, trithorax-like protein 2 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G156500 [exp] 66 / 1e-12 ND /
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0049 [flax] [poplar] Tudor PF00855 [flax] [poplar] PWWP PWWP domain
Representative CDS sequence Show only first row Show all	>Lus10032634 pacid=23146285 polypeptide=Lus10032634 locus=Lus10032634.g ID=Lus10032634.BGIv1.0 annot-version=v1.0 ATGAAGGGTAAACAACCGGAAACTAGCAGAAGGAACGATGGAAAGGGACGTGGGGAAAGGGTTGTTGCCGAGCTCTCGGAAGGAAAGCCTGAGCCTGGAG ATGTGATTTGGACCAAACTCTCTGGTCGTTTATGGTGGCCTGCACTGGTCGCGGAAGAAAATGCCAGTACAGGAAATAAACGTCGAAGAAGATCAGACAG TGATGTTCTTGTAAGATTGTATGGAAGCTCTGAACAGCTGTATGTTGATCCTATGAAATATCGATCCCAGTTTGAGACAATACTTGGACAAAACAACGGT TCTTGTCATGAGATTCTCTGGAAGTCTGTCCTCAAGGAGCTTCCTCATCTAGAGCCTGATAGTTTGAAAGGATGCAGAGGGAAAGCTGATTCCTCCAAAC GTAAGAAGTCAAACCGTGATGAAGTCAAAGAGAAAACAACTACCTCAAATGATGACGTGACGGCTTCAACGAAACAAAAGAACACACCACAAAAGAAGAA AGTGAAGGCTGATGACCGAAGTGATGAAGACAGAAGAGCAGTGCAACAAGATAAGGTTGGAGAGCTGACTCCGCGGAGAGTAAAAGTGATGCAAACTCTT GGTCTGGTTCCTCCTTCTGGATCTCCATTCTGA
AA sequence Show only first row Show all	>Lus10032634 pacid=23146285 polypeptide=Lus10032634 locus=Lus10032634.g ID=Lus10032634.BGIv1.0 annot-version=v1.0 MKGKQPETSRRNDGKGRGERVVAELSEGKPEPGDVIWTKLSGRLWWPALVAEENASTGNKRRRRSDSDVLVRLYGSSEQLYVDPMKYRSQFETILGQNNG SCHEILWKSVLKELPHLEPDSLKGCRGKADSSKRKKSNRDEVKEKTTTSNDDVTASTKQKNTPQKKKVKADDRSDEDRRAVQQDKVGELTPRRVKVMQTL GLVPPSGSPF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G27650			Tudor/PWWP/MBT superfamily pro...		Lus10032634 [exp]	0	1
AT2G38450			unknown protein		Lus10001262 [exp]	1.4	0.9339
AT1G43860			sequence-specific DNA binding ...		Lus10042780 [exp]	2.8	0.9259
AT4G28830			S-adenosyl-L-methionine-depend...		Lus10043228 [exp]	3.0	0.9244
AT3G10530			Transducin/WD40 repeat-like su...		Lus10035742 [exp]	3.2	0.9194
AT5G15220			Ribosomal protein L27 family p...		Lus10007170 [exp]	4.0	0.9197
AT3G60360		EDA14, UTP11	U3 SMALL NUCLEOLAR RNA-ASSOCIA...		Lus10034210 [exp]	6.2	0.9056
AT4G22000			unknown protein		Lus10008487 [exp]	6.9	0.9164
AT3G55620		eIF6A, EMB1624	embryo defective 1624, eukaryo...		Lus10037938 [exp]	8.0	0.9110
AT2G45520			unknown protein		Lus10015859 [exp]	8.9	0.9009
AT3G44680		HDA09, HDA9	histone deacetylase 9 (.1)		Lus10020570 [exp]	9.5	0.9108

Compare expression of checked genes

Lus10032634 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.