Plant FIBer expression Database

Lus10032635 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT4G26900 937 / 0 HISN4, HISHF, AT-HF HIS HF (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10043113
[exp]
1143 / 0 AT4G26900 937 / 0.0 HIS HF (.1)
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.001G267400
[exp]
993 / 0 AT4G26900 931 / 0.0 HIS HF (.1)
Potri.009G061700
[exp]
981 / 0 AT4G26900 958 / 0.0 HIS HF (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0036 TIM_barrel PF00977 His_biosynth Histidine biosynthesis protein
CL0014 Glutaminase_I PF00117 GATase Glutamine amidotransferase class-I
Representative CDS sequence
>Lus10032635 pacid=23146303 polypeptide=Lus10032635 locus=Lus10032635.g ID=Lus10032635.BGIv1.0 annot-version=v1.0
ATGGCGGCGCCGTCGCCATTCTCTTCGTCTACTACTACTACTCCTTCTTCTTCTTCCTCAAGGCTGGCCAATACTTCGTCTTTATCATCTTCATCCTCCC
TTCTTTCTCTTTCGAAGGATTTCCGCAAAACTCAGCTGCAGGCACACTTCAAATCCTCCTCAAGAAGAAATCTCACTGTTCGTGCCTCTTCCAGCGATTC
CGTTGTCACTCTGCTGGATTACGGAGCTGGCAATGTCCGTAGTGTCAGAAACGCCATTCACCATCTGGGCTTCCAGATTAAAGACGTGCAAACTCCAGCA
GACATTCTGAATGCAAGCCGCCTTATTTTCCCAGGTGTTGGGGCATTTGCACCAGCCATGGATGTGCTTAATAAAACTGGAATGGCTGAAGCTCTATGTA
CATACATTGAGAAGGACCGGCCATTTCTGGGAATTTGTCTTGGACTTCAACTGCTTTTCGAGTCCAGCACTGAGAATGGTCCAGCTTTTAACATTTATTG
GCTGCTTGAATACTTGAGCTCAGTTACTGGTCTTGGCTTGATCCCTGGTGTGGTTGGGAAATTCGATTCATCAAATGGCTTCAGAGTGCCTCACATTGGT
TGGGATGCTTTGCAAATTGCTAAAGAGTCCGAGATTTTGGATGAAATTGGCAACCGCCATGTATACTTTGTCCACTCTTACCGTGCAATGCCATCAGAGG
AAAATAAAGAATGGATTTCCTCTACTTGTGATTATGGTGACACATTTATAGCATCCATCAGAAAGGGAAATGTCCATGCTGTTCAGTTCCATCCAGAGAA
GAGTGGAGATGTTGGCCTTTCAGTACTTAGAAGGTTCTTACTTCCAAAATCAGTTCCACCGCAGAAGCTAAATCAAGGGAAGGCTTCGAAACTAGCAAAA
AGGGTAATTGCTTGTCTTGACGTGAGGACAAATGACGAAGGAGACCTCGTCGTAACCAAAGGAGACCAGTACGATGTCAGGGAGCAGACAGAAGAAAACG
AGGTGAGAAACCTGGGGAAGCCAGTAGAGCTTGCTGGGCAGTACTACCTAGACGGTGCAGATGAGGTTACTTTCTTAAACATCACTGGCTTCCGCGATTT
CCCCTTGGGCGATTTGCCAATGCTGCAGGTCCTGAGGTACACTTCTGAAAATGTCTTTGTACCCTTGACTGTTGGAGGCGGCATTAGAGATTTCACAGAT
TCTAATGACAGGCACTACTCCAGTTTGGAAGTAGCTTCAGAATATTTCAGGTCTGGAGCTGATAAGATTTCGATTGGAAGTGATGCTGTTTATGCTGCAG
AGGAATATTTAAGAACTAAAGTCAAGACTGGAAATAGTAGTATTGAACAGATATCTAGAGTTTATGGAAATCAGGCTGTGGTTGTAAGCATTGATCCTCG
TAGGGTGTACCTTAGTAGTCCTAAAGATGTAGAGTTCAAGGCTGTAAAGTTAACAACCCCAGGTCCAAACGGGGAAGAATTCGCGTGGTACCAATGCACG
GTTAGTGGTGGTAGAGAAGGTCGTCCGATCGGAGCATATGAACTTGCACAGGCAGTTGAAGAACTGGGAGCTGGGGAGATACTGTTGAATTGCATTGACT
GCGATGGACAAGGAAAAGGGTTTGACATAGATCTGATACATTTGATATCTGATGCTGTGAGCATCCCGGTGATTGCTAGTAGTGGTGCAGGCAATGTGGA
GCACTTCTCGGAGGTATTCGAGAAAACCAATGCATCTGCAGCCTTGGCGGCTGGCATTTTCCACAGGAAAGAGGTGCCGATTGGGTCAGTTAAAGAACAC
TTGTTGAAGGAAGGGATTGAAGTTAGGGTTGCAGAGACTCTATGGGACCACAAGGCCGAAGAACTCTGTAAGCCACAAATCGCAATGTTCCCAGCAAAAC
CTGCAATGACCTTCCAAGAAGATTGGAGGTCACCATCTTCGGAAATTTCACTCTTCGACAATTAA
AA sequence
>Lus10032635 pacid=23146303 polypeptide=Lus10032635 locus=Lus10032635.g ID=Lus10032635.BGIv1.0 annot-version=v1.0
MAAPSPFSSSTTTTPSSSSSRLANTSSLSSSSSLLSLSKDFRKTQLQAHFKSSSRRNLTVRASSSDSVVTLLDYGAGNVRSVRNAIHHLGFQIKDVQTPA
DILNASRLIFPGVGAFAPAMDVLNKTGMAEALCTYIEKDRPFLGICLGLQLLFESSTENGPAFNIYWLLEYLSSVTGLGLIPGVVGKFDSSNGFRVPHIG
WDALQIAKESEILDEIGNRHVYFVHSYRAMPSEENKEWISSTCDYGDTFIASIRKGNVHAVQFHPEKSGDVGLSVLRRFLLPKSVPPQKLNQGKASKLAK
RVIACLDVRTNDEGDLVVTKGDQYDVREQTEENEVRNLGKPVELAGQYYLDGADEVTFLNITGFRDFPLGDLPMLQVLRYTSENVFVPLTVGGGIRDFTD
SNDRHYSSLEVASEYFRSGADKISIGSDAVYAAEEYLRTKVKTGNSSIEQISRVYGNQAVVVSIDPRRVYLSSPKDVEFKAVKLTTPGPNGEEFAWYQCT
VSGGREGRPIGAYELAQAVEELGAGEILLNCIDCDGQGKGFDIDLIHLISDAVSIPVIASSGAGNVEHFSEVFEKTNASAALAAGIFHRKEVPIGSVKEH
LLKEGIEVRVAETLWDHKAEELCKPQIAMFPAKPAMTFQEDWRSPSSEISLFDN

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT4G26900 HISN4, HISHF, A... HIS HF (.1) Lus10032635
[exp]
0 1
AT4G01320 ATSTE24 Peptidase family M48 family pr... Lus10018820
[exp]
2.8 0.9095
AT4G31420 C2H2ZnF Zinc finger protein 622 (.1.2) Lus10020150
[exp]
8.5 0.9084
AT4G26900 HISN4, HISHF, A... HIS HF (.1) Lus10043113
[exp]
9.1 0.9228
AT4G26300 EMB1027 embryo defective 1027, Arginyl... Lus10034982
[exp]
9.2 0.9048
AT5G61770 PPAN PETER PAN-like protein (.1.2.3... Lus10002672
[exp]
14.5 0.8796
AT5G14060 CARAB-AK-LYS Aspartate kinase family protei... Lus10012568
[exp]
14.5 0.9091
AT2G34260 WDR55 human WDR55 \(WD40 repeat\) ho... Lus10034796
[exp]
15.2 0.8762
AT3G21820 SDG36, ATXR2 SET DOMAIN PROTEIN 36, histone... Lus10015102
[exp]
15.3 0.9050
AT2G29690 ATHANSYNAB, ASA... anthranilate synthase 2 (.1) Lus10014830
[exp]
18.0 0.8918
AT2G43040 NPG1 no pollen germination 1, tetra... Lus10020725
[exp]
18.1 0.8955

Lus10032635 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.