Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G11910 708 / 0 ATAPA1, APA1 aspartic proteinase A1 (.1) AT1G62290 691 / 0 Saposin-like aspartyl protease family protein (.1.2) AT4G04460 635 / 0 Saposin-like aspartyl protease family protein (.1.2) AT4G22050 178 / 5e-51 Eukaryotic aspartyl protease family protein (.1) AT1G69100 157 / 6e-43 Eukaryotic aspartyl protease family protein (.1) AT3G12700 46 / 2e-05 Eukaryotic aspartyl protease family protein (.1.2) AT3G42550 45 / 9e-05 Eukaryotic aspartyl protease family protein (.1) AT5G22850 43 / 0.0006 Eukaryotic aspartyl protease family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10022957 [exp] 862 / 0 AT1G11910 791 / 0.0 aspartic proteinase A1 (.1) Lus10021552 [exp] 852 / 0 AT1G11910 782 / 0.0 aspartic proteinase A1 (.1) Lus10043112 [exp] 735 / 0 AT1G11910 639 / 0.0 aspartic proteinase A1 (.1) Lus10020024 [exp] 688 / 0 AT1G11910 762 / 0.0 aspartic proteinase A1 (.1) Lus10015547 [exp] 671 / 0 AT1G11910 742 / 0.0 aspartic proteinase A1 (.1) Lus10035285 [exp] 571 / 0 AT1G11910 619 / 0.0 aspartic proteinase A1 (.1) Lus10030041 [exp] 332 / 3e-108 AT1G11910 535 / 0.0 aspartic proteinase A1 (.1) Lus10042978 [exp] 45 / 0.0002 AT3G18490 504 / 3e-176 Eukaryotic aspartyl protease family protein (.1) Lus10032482 [exp] 44 / 0.0003 AT3G18490 339 / 2e-113 Eukaryotic aspartyl protease family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G356900 [exp] 782 / 0 AT1G11910 800 / 0.0 aspartic proteinase A1 (.1) Potri.011G007600 [exp] 733 / 0 AT1G11910 721 / 0.0 aspartic proteinase A1 (.1) Potri.004G007600 [exp] 717 / 0 AT1G11910 779 / 0.0 aspartic proteinase A1 (.1) Potri.013G002200 [exp] 615 / 0 AT1G11910 622 / 0.0 aspartic proteinase A1 (.1) Potri.002G228300 [exp] 564 / 0 AT1G11910 604 / 0.0 aspartic proteinase A1 (.1) Potri.005G002800 [exp] 539 / 0 AT1G11910 604 / 0.0 aspartic proteinase A1 (.1) Potri.010G003400 [exp] 497 / 1e-172 AT1G62290 548 / 0.0 Saposin-like aspartyl protease family protein (.1.2) Potri.005G144600 [exp] 52 / 1e-06 AT5G43100 729 / 0.0 Eukaryotic aspartyl protease family protein (.1) Potri.007G106300 [exp] 43 / 0.0005 AT3G20015 575 / 0.0 Eukaryotic aspartyl protease family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0129 [flax] [poplar] Peptidase_AA PF00026 [flax] [poplar] Asp Eukaryotic aspartyl protease CL0129 [flax] [poplar] PF03489 [flax] [poplar] SapB_2 Saposin-like type B, region 2 CL0129 [flax] [poplar] PF05184 [flax] [poplar] SapB_1 Saposin-like type B, region 1
Representative CDS sequence Show only first row Show all	>Lus10032636 pacid=23146408 polypeptide=Lus10032636 locus=Lus10032636.g ID=Lus10032636.BGIv1.0 annot-version=v1.0 ATGGGGACGTTTTCCAGCCATAGGAATATCACAGCTGCTTTTTTGATTTGCCTTCTGCTGCCTCTGGTTTTTGCTGCATCCAACGATGGGCTTGTTAGAA TCGGAATCAAGAAGAGAAAGGTTGATCAGAACAACCTTGTCGCTGCTAAGTTGGGGTCCAAAGAAGGAGAGCTATTGAATGCTGCTATTAGAAAGTACCA CTTCAGTGGGAATCTGGGAGATGCTGCAGACACGGACATTGTAACTCTCAAGAACTATATGGATGCTCAGTACTTTGGTGAGATTGGTATTGGCACTCCC CCGCAAACGTTCACTGTGATATTTGATACTGGTAGTTCTAATCTGTGGGTGCCCTCTTCCAAGTGCTATTTCTCGCTTGCTTGCTATTTCCACTCCAAGT ACAAGTCAAGTCGTTCAAGTACTTACAAGAAGAATGGTAAATCTGCTGCTATCCAGTATGGAACTGGAGCTATTTCTGGCTTCTTCAGCGAGGATAGTGT AAAAGTTGGTGATATTGTTGTCAAGAGCCAGGAATTTATTGAAGCAACAAAGGAGCCAAGCATCACATTCTTGGTGGCTAAGTTTGATGGAATACTTGGG CTTGGATTTCAGGAAATTTCTGTGGGAAATGCTGTCCCTGTGTGGTACAACATGGTCGACCAAGGACTCATCAAGGAGCCTGTATTTTCCTTTTGGTTTA ACCGCAATGCTGACGAGGAACAAGGGGGTGAACTTGTCTTTGGTGGTGTGGATCCTAATCACTTTGTTGGTGAGCACACATATGTGCCTGTGACACAGAA AGGGTACTGGCAGTTTGATATGGGCGATGTTCTGGTTGATGGAAAATCTACTGGATTCTGCTCTGGTGGTTGTGCAGCGATTGCCGATTCTGGAACCTTA TTTTTCACTCCATGTTTCTATATGAGGTTGATTATTCTGTGTGCTGTCTCTGGTGTCGAATTTCTGGCTTCAGATTTTGGGATGGGCTTCAAAATCATGC TGAAGTTTTATGATTCAATGCAGGCAATTATTGCAGAAGTTAACCATGCCATTGGTGCTACTGGGGTAGCCAGCCAAGAATGTAAGGCCGGAGTTGCTCA ATATGGAGAAACTATAATTAAGATGATTTTAGCAAAGGACGAACCGAAAAAGATCTGCTCTCAGATTGGTTTGTGTGAATTTGATGGGACGCAAGGTGTT AGTATGGGTATTGAGAGTGTTGTGAAGAACATTGAGAAAGCAGTTGGCACTTCTAGTGAGGCAACATGCGCTGCTTGTGAGATGGCCGTTGTCTGGATGC AGAACAAGCTTAAGCAGAATGAAACGCAGCAGCACGTAATTGACTATGCAAATGACCTGTGTGATCGATTGCCTAGTCCAATGGGAGAATCGTCGGTCGA TTGTGGCAGCATGTCAACCATGCCTAACGTTTCATTTACTATTGGCGGGAAGGTCTTTGACCTTGCTCCCGAACAGTATGTACTCAAAGTTGGAGAGGGG TCTGCTGCTCAATGCATTAGTGGGTTTACAGCGATCGATGTGCCACCGCCACGTGGTCCACTCTGGATTCTCGGCGATGTGTTCATGGGACGCTATCACA CGGTGTTTGACTACGGTAACCTCAGGATTGGATTCGCAGAAGCAGCCTAG
AA sequence Show only first row Show all	>Lus10032636 pacid=23146408 polypeptide=Lus10032636 locus=Lus10032636.g ID=Lus10032636.BGIv1.0 annot-version=v1.0 MGTFSSHRNITAAFLICLLLPLVFAASNDGLVRIGIKKRKVDQNNLVAAKLGSKEGELLNAAIRKYHFSGNLGDAADTDIVTLKNYMDAQYFGEIGIGTP PQTFTVIFDTGSSNLWVPSSKCYFSLACYFHSKYKSSRSSTYKKNGKSAAIQYGTGAISGFFSEDSVKVGDIVVKSQEFIEATKEPSITFLVAKFDGILG LGFQEISVGNAVPVWYNMVDQGLIKEPVFSFWFNRNADEEQGGELVFGGVDPNHFVGEHTYVPVTQKGYWQFDMGDVLVDGKSTGFCSGGCAAIADSGTL FFTPCFYMRLIILCAVSGVEFLASDFGMGFKIMLKFYDSMQAIIAEVNHAIGATGVASQECKAGVAQYGETIIKMILAKDEPKKICSQIGLCEFDGTQGV SMGIESVVKNIEKAVGTSSEATCAACEMAVVWMQNKLKQNETQQHVIDYANDLCDRLPSPMGESSVDCGSMSTMPNVSFTIGGKVFDLAPEQYVLKVGEG SAAQCISGFTAIDVPPPRGPLWILGDVFMGRYHTVFDYGNLRIGFAEAA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G11910		ATAPA1, APA1	aspartic proteinase A1 (.1)		Lus10032636 [exp]	0	1
AT5G03460			unknown protein		Lus10014419 [exp]	1.4	0.9215
AT3G24315		ATSEC20	Sec20 family protein (.1)		Lus10023717 [exp]	2.4	0.9153
AT1G65020			unknown protein		Lus10024543 [exp]	2.8	0.9046
AT5G35080			unknown protein		Lus10039972 [exp]	3.2	0.9030
AT1G35620		ATPDI8, ATPDIL5...	ARABIDOPSIS THALIANA PROTEIN D...		Lus10022494 [exp]	4.6	0.8980
AT4G23430		AtTic32-IVa	translocon at the inner envelo...		Lus10035481 [exp]	6.6	0.8908
AT1G77370			Glutaredoxin family protein (....		Lus10028355 [exp]	7.5	0.8762
AT3G54840		ARA6, AtRABF1, ...	Ras-related small GTP-binding ...		Lus10017462 [exp]	7.5	0.9107
AT5G45130		ATRAB-F2A, RHA1...	ARABIDOPSIS RAB HOMOLOG F2A, R...		Lus10040625 [exp]	8.5	0.9004
AT1G16240		ATSYP51, SYP51	syntaxin of plants 51 (.1.2.3)		Lus10002446 [exp]	10.1	0.8290

Compare expression of checked genes

Lus10032636 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.