Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G50660 616 / 0 unknown protein AT3G20350 526 / 9e-180 unknown protein AT3G11590 154 / 1e-39 unknown protein AT1G11690 108 / 3e-26 unknown protein AT5G22310 90 / 1e-18 unknown protein AT1G64180 73 / 4e-13 intracellular protein transport protein USO1-related (.1) AT2G46250 70 / 3e-12 myosin heavy chain-related (.1) AT1G64690 50 / 3e-06 BLT BRANCHLESS TRICHOMES, branchless trichome (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10043111 [exp] 1140 / 0 AT1G50660 616 / 0.0 unknown protein Lus10040076 [exp] 711 / 0 AT1G50660 756 / 0.0 unknown protein Lus10021521 [exp] 699 / 0 AT1G50660 750 / 0.0 unknown protein Lus10021324 [exp] 153 / 9e-39 AT3G11590 530 / 3e-180 unknown protein Lus10017001 [exp] 152 / 1e-38 AT3G11590 587 / 0.0 unknown protein Lus10002069 [exp] 139 / 2e-35 AT1G50660 147 / 6e-38 unknown protein Lus10013312 [exp] 134 / 4e-33 AT3G11590 285 / 1e-88 unknown protein Lus10013311 [exp] 133 / 2e-32 AT3G11590 332 / 1e-105 unknown protein Lus10005200 [exp] 130 / 2e-31 AT3G11590 322 / 1e-101 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G090100 [exp] 632 / 0 AT1G50660 689 / 0.0 unknown protein Potri.004G015800 [exp] 369 / 2e-119 AT1G50660 390 / 1e-126 unknown protein Potri.011G003200 [exp] 349 / 4e-111 AT1G50660 350 / 1e-110 unknown protein Potri.004G199500 [exp] 169 / 1e-44 AT3G11590 399 / 6e-131 unknown protein Potri.016G074300 [exp] 169 / 2e-44 AT3G11590 560 / 0.0 unknown protein Potri.006G207800 [exp] 157 / 2e-40 AT3G11590 582 / 0.0 unknown protein Potri.009G160900 [exp] 154 / 7e-40 AT3G11590 399 / 9e-132 unknown protein Potri.003G135000 [exp] 126 / 4e-30 AT5G41620 494 / 1e-167 unknown protein Potri.001G096200 [exp] 124 / 2e-29 AT5G41620 523 / 6e-180 unknown protein Potri.014G093400 [exp] 105 / 1e-23 AT5G41620 347 / 8e-111 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10032637 pacid=23146329 polypeptide=Lus10032637 locus=Lus10032637.g ID=Lus10032637.BGIv1.0 annot-version=v1.0 ATGAAGGTCCCCGCCGTGGAACAGCATTCATCGGCGGCAGGAGCTGGGGGAACTTCTGTTCTTACTTCAAAGGAGTTCAATCAGAACCCACATCAGCAAA ATCCAGATTCAGATCTCGCCTGGCCACCACGGCGCAGGACCCGGTCTAAGCGGGTCGGACCTTCGGTAGGGCATCGTAGCCGACCCGAGACGCCTATGCT GCAATGGAAAGTTGAGGGAAATGTCGGAGCGGAGGAGGTCGACGAGGATACTGCGGCGGTGGATGCGGCGGACGACAAGCAGAGGAAGAGTAAAGATGAT GGAAGGAGAGGGAGGAGGCAGAAGAGCAGTGTGAGTAACTTGGTTTCTGCGAGGAAGCTTGCTGCTGGGCTGTGGAGGTTGCAGTCGCCGCCTGGTGCTG CTCATGTTGGCGTCTCATTTATGCACCATGATAGTGAGAAAGTCTATGGTTCAGAGTTTAACGATCCATTTCACATCTCAACTTCCGCCTCTGCTACCAA GAACAACAAGTTGTTGTGCAAGCACAAACCACCGTTCCAGTTTTCCAGCTCTGCAATGGAGGGTTCAACTAAGTGGGATCCTATCTGCTCCAACACTTCG AACGCGGCAACACACCAAATCCACAGCCACATGAAACGTCTTGATCAACAAGTTAGTACCGTATCAGTGGTTACCGCCCTCGAAGCTGAGCTCAACAAAG CACGACTACGCATCCACGAGCTCGAAACTGAACGACAATCGTCAAAGAAGAAACTCGAGCACTTCCTGAAGAAAGTTAGCGATGAAAGAACTGCATGGAG GAGCAAAGAACACGAGAAAATACGTGCATTCGTCAATGACATCAAGGCTGACTTGAGCCGGGAAAGAAAAAACCGTCAAAGATTGGAGATTTTGAACTCG AAACTGGTGAATGAACTAGCCGATACAAAAGTATCGGCCAAGAGACTGATGCAGGACTATGGAAAAGAAAGAAAGGCTCGAGAACTAATAGAGGAAGTCT GTGACGAGCTTGCACGAGAAATCGGAGACGACAAAGCTGAAATCGAAGCGATAACTAGGGAGAGTTTGAAAATGAGGGAAGAAGTAGACGACGAAAGGAA GATGTTGCAGATGGCTGAGGTGTGGCGCGAAGAACGTGTCCAAATGAAGCTGGTTGATGCCAAAGTAGCCCTTGAGGAGAAGTATTCTCAAATGAACATG CTTCTAGGAAACTTGGCCGACTTTTTAAAGTCGAAAGGTGAAGTTTCCGACATGAAACAAGCAGAGTCGCTTATGCAGGCTGCAGCATCCATTGATATGG AAGAGGTAAAGGAATTCACATACGAGCCCCCGAATCAAGATGATATATTTGCTGTTCTGGAAGAGGTTAATTCTGGTTTGCCAAATGAGAGGGACATTGA ACAATGTCATGATAATACCTTCAGCCCTGCAAGTCACGGCTCGAATATGCATACAGCGAGCCCCGAGGCCAATTTCGACGATGGAAGTGGTTGGGAAACT GTAAGCCATCTTGACGATCAAGGCTCGAGCTTTTCGCCAGAAGGAAGCGCTCCATCCATCAATAAAGAACATCATCGGTACAGTAATGTGTCAGGGAGTG GTGGAGAATGGGAAGACATCATTTACAAGGAGACCCCTATTAGTGAAGTCTGTGGTTCTACACGTAGTAGGCAGCAGGGTAAGAAAGTATCAGCTATTGC AAGGCTATGGAAGGATGGTGGAGACAGCTGCGAAACAATTTCAGGTGATGGAATGAATGGTAGGTTGTACAGTGGAAGGAAATCTCGTGCAGGCATTGTA TCGTCAGATAAAGAGTGTAGCCCTTCTGGTCAGTGGAGTTCAGCAGAGTCAGGGATCTCCCAGTTAAGTAGAGGAATGAAAGGATGCATGGAATGGCCGA AAGGGGCAGAGAAGCACATTCCAAAGTCTAGGCTAATGGAGTCCCAGAAACTTCAACTCCGACATGTACTGAAGCAGAAGATTTAG
AA sequence Show only first row Show all	>Lus10032637 pacid=23146329 polypeptide=Lus10032637 locus=Lus10032637.g ID=Lus10032637.BGIv1.0 annot-version=v1.0 MKVPAVEQHSSAAGAGGTSVLTSKEFNQNPHQQNPDSDLAWPPRRRTRSKRVGPSVGHRSRPETPMLQWKVEGNVGAEEVDEDTAAVDAADDKQRKSKDD GRRGRRQKSSVSNLVSARKLAAGLWRLQSPPGAAHVGVSFMHHDSEKVYGSEFNDPFHISTSASATKNNKLLCKHKPPFQFSSSAMEGSTKWDPICSNTS NAATHQIHSHMKRLDQQVSTVSVVTALEAELNKARLRIHELETERQSSKKKLEHFLKKVSDERTAWRSKEHEKIRAFVNDIKADLSRERKNRQRLEILNS KLVNELADTKVSAKRLMQDYGKERKARELIEEVCDELAREIGDDKAEIEAITRESLKMREEVDDERKMLQMAEVWREERVQMKLVDAKVALEEKYSQMNM LLGNLADFLKSKGEVSDMKQAESLMQAAASIDMEEVKEFTYEPPNQDDIFAVLEEVNSGLPNERDIEQCHDNTFSPASHGSNMHTASPEANFDDGSGWET VSHLDDQGSSFSPEGSAPSINKEHHRYSNVSGSGGEWEDIIYKETPISEVCGSTRSRQQGKKVSAIARLWKDGGDSCETISGDGMNGRLYSGRKSRAGIV SSDKECSPSGQWSSAESGISQLSRGMKGCMEWPKGAEKHIPKSRLMESQKLQLRHVLKQKI

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G50660			unknown protein		Lus10032637 [exp]	0	1
AT3G12210			DNA binding (.1.2)		Lus10007717 [exp]	16.3	0.8499
AT3G19300			Protein kinase superfamily pro...		Lus10014071 [exp]	21.7	0.8445
AT1G43850		SEU	SEUSS transcriptional co-regul...		Lus10028635 [exp]	28.4	0.8098
AT4G13640	GARP	UNE16	unfertilized embryo sac 16, Ho...		Lus10007132 [exp]	30.7	0.8230
AT4G34460		ELK4, AGB1, ATA...	ERECTA-LIKE 4, GTP binding pro...		Lus10026337 [exp]	32.5	0.7566
AT3G13560			O-Glycosyl hydrolases family 1...		Lus10039179 [exp]	42.0	0.8162
AT5G02560		HTA12	histone H2A 12 (.1.2)		Lus10023754 [exp]	53.1	0.8139
AT2G42110			unknown protein		Lus10029282 [exp]	53.8	0.8167
AT5G17510			unknown protein		Lus10024530 [exp]	66.6	0.7404
AT4G28950		ATRAC7, ARAC7, ...	Arabidopsis RAC-like 7, RHO-re...		Lus10034932 [exp]	68.6	0.8052

Compare expression of checked genes

Lus10032637 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.