Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G26980 353 / 3e-120 RNI-like superfamily protein (.1) AT4G15475 44 / 0.0001 F-box/RNI-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10043110 [exp] 508 / 0 AT4G26980 327 / 1e-111 RNI-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G090700 [exp] 392 / 2e-135 AT4G26980 370 / 7e-128 RNI-like superfamily protein (.1) Potri.006G081600 [exp] 43 / 0.0003 AT4G07400 286 / 3e-89 VIER F-box proteine 3 (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10032638 pacid=23146238 polypeptide=Lus10032638 locus=Lus10032638.g ID=Lus10032638.BGIv1.0 annot-version=v1.0 ATGACTGGAATCAGAGACCGATACACCGCCGGAATAAAAACGATAATTAGATCCCCGAATTGCCTATTGTCGGCGTTCTCCTTCCGTTCTTCTTTGCGGT GGCGGGTGGCCCTAATTCAACCCCCGGTGTTTCTCCGTCAGCCTCCCTTCTTTCTTCGCCTTCCCTCCAAACTTCTGATGGAAAAAGGAAAACCTGCAGA GGATACCTTAGCAGCGTCGTTGAAGAAACTTGATTTGGATTCCGTCGCTTCTAATTCAACTTCTTCCCCTTCCATTTCATCCCTTAAACCCTCCCGATTT CGCAGGGAGAAGAAAGGAAAGCCTCCGAGTTTGGTGAGCTTGTGTCTCGGATTACTGGGGGCGCATTTGGAGGATATTGTTGGACAGCTAGGAGAGATTT CTATCGGCTTCCCTGCTCACATTAAGCTTGCGGTTGCAGCAATTGCCCGAAGGCGGAGATTGCTGAACAATGATGTGATCGTTTCATTAGCAGATAGTTC CTGGGAAGTTGTTGATATCTCCGGATCAGATGTCACTGATTCAGGCTTGGCTGCTATATCTCAAATATGCAGCCAGCTTCGGGCCATTGATATAAGGAAT TACAAATCGGAAAGGAACCATGTTTTCTGCAGCCGCTGCTATCATATTACTCCTGCTGGCGTCTCTCAACTTGTTCAACATTGCAAGTCATTGCAAGCGT TGAGATGCGGAGGATGCCCAAGGAGCAATTACACTGCACGTGGTTGCTTGGGCTTGTTCAAGCCTAAGCTGATGGATCTAAATGAAGATTCGTGGGAGGA ACTTGATGCGACCGAGATTGGTAATGGTGCAGAATCCCTTCGGTGGCTTGTTTGGCCGAATATCGATAAAGACTCGCTAGAAATCTTAGCCACCGAGTGC CCGCGCATTATAGTCAACCCCAAGCCATCACGGTTAGGTTTTCGTGGAATTGAAGTACCGATAGAAGCATATGCAGATATTTCACTGGACAGCCCGTTTG TGAAGGACATCAATCCAACAACATGGGCCTTGGGTGGAATTGTACCTAGAGCTGTGCCCCCGACAGCTTCAGGCAGCATCAATGAGCTGCCCATAGCAGA AAGGTTCAGGCTGGCATTCGTCGAGAGAGACACACGGTTGGCCCCCAAGCGAGCCAAGAACGCGAGGCAGCATCAACGTCGTGCTGAGAGGGAGATGTTG ATGAGTAGCACTGACGCCAAGGCAATAGCTCTTGCCTCTCGCGCTAGCAAATCATTCCATGTTAAGAGCTAA
AA sequence Show only first row Show all	>Lus10032638 pacid=23146238 polypeptide=Lus10032638 locus=Lus10032638.g ID=Lus10032638.BGIv1.0 annot-version=v1.0 MTGIRDRYTAGIKTIIRSPNCLLSAFSFRSSLRWRVALIQPPVFLRQPPFFLRLPSKLLMEKGKPAEDTLAASLKKLDLDSVASNSTSSPSISSLKPSRF RREKKGKPPSLVSLCLGLLGAHLEDIVGQLGEISIGFPAHIKLAVAAIARRRRLLNNDVIVSLADSSWEVVDISGSDVTDSGLAAISQICSQLRAIDIRN YKSERNHVFCSRCYHITPAGVSQLVQHCKSLQALRCGGCPRSNYTARGCLGLFKPKLMDLNEDSWEELDATEIGNGAESLRWLVWPNIDKDSLEILATEC PRIIVNPKPSRLGFRGIEVPIEAYADISLDSPFVKDINPTTWALGGIVPRAVPPTASGSINELPIAERFRLAFVERDTRLAPKRAKNARQHQRRAEREML MSSTDAKAIALASRASKSFHVKS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G26980			RNI-like superfamily protein (...		Lus10032638 [exp]	0	1
AT4G10430			TMPIT-like protein (.1.2.3)		Lus10033263 [exp]	3.5	0.8714
AT1G12680		PEPKR2	phosphoenolpyruvate carboxylas...		Lus10036464 [exp]	4.2	0.8876
AT1G33230			TMPIT-like protein (.1)		Lus10033261 [exp]	7.9	0.8617
AT2G16090		ATARI2, ARI2, A...	ARABIDOPSIS ARIADNE 2, ARIADNE...		Lus10026319 [exp]	11.0	0.8601
AT3G14830			unknown protein		Lus10005552 [exp]	18.7	0.8660
AT5G13020		AtEML3, ACK1	EMSY-like 3, Emsy N Terminus (...		Lus10031221 [exp]	19.3	0.8387
AT3G48195			Phox (PX) domain-containing pr...		Lus10001232 [exp]	19.7	0.8518
AT5G56290		EMB2790, PEX5, ...	EMBRYO DEFECTIVE 2790, ARABIDO...		Lus10032883 [exp]	20.2	0.8659
AT1G30540			Actin-like ATPase superfamily ...		Lus10038542 [exp]	24.2	0.8406
AT2G31260		ATAPG9, APG9	autophagy 9 (APG9) (.1)		Lus10003567 [exp]	26.0	0.8663

Compare expression of checked genes

Lus10032638 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.