Plant FIBer expression Database

Lus10032639 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT1G50710 419 / 6e-145 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10043109
[exp]
595 / 0 AT1G50710 494 / 6e-175 unknown protein
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.011G090800
[exp]
444 / 1e-154 AT1G50710 530 / 0.0 unknown protein
PFAM info
Representative CDS sequence
>Lus10032639 pacid=23146268 polypeptide=Lus10032639 locus=Lus10032639.g ID=Lus10032639.BGIv1.0 annot-version=v1.0
ATGGTGAAGGGGCTGCAAGGGGGAGGGACCCAGAACCTGCCGCCGGATGTGGCGCAGGTGATGGATCAGTTGGAGCGTCACTGCCTGGCTCCTGATGGAT
CTCTCGTCTCCAAATCCGTCTACTACGACCTTCAACTTGCAAGAGAAGAGATGGCTAGAGAAAGACTACGTTACCTTGAAGCTATGGCAATTTACGGCGA
AGCAACTGCTATGGTGGAAGAGTATCAACAGGCTGTGTCAACCCCTACTCTTGGAGGTATTCGAGACGTCCTGTACCCGCAACTTAGCTTGAAGAGCCAC
TCTCAGGTTTATGAGACTCTAGAGCATCGGTTGGTTGTCGCAGAAGCAGCTCAGAAGCTGAGGCTTCCTCTTATATCAAAAGATGGCGAGGTTCACGAGG
AGGAAATTGAAAAATGGAGTGTGATGTCACGAAGCTCCCTAGATAGTACCAGTACCAGTGCCACAATCAGCTCAAGCTCTAATCCCTTGCATTATCCAAA
TAGTAGTACTACAAACAACGCTGCAAGTGTAATGAGTAGTGCTTTTTCTCCCAGCGTTAGTGATTCTGTGGATCCTGGCGTTGGTGGCTTAGCCAATCAA
TATCTCGGTATTACCCCTGCTTATCTATGGCAAACCCAGCTTCAACAAATGCCATTAATGATGGACATGGCTGAATACCAGATGTCTTTGTCCTGTGAGA
TTGAGACTCGTCTAAAGGATAAATGTGATAAGTTAGCTGATGCCTTTGTTGATGATATTGATTCTGCATCTGCTAATCCAAATTCAACTGCTTGGCTACC
TGAGAGGGTGAAGTTGATAACTGAAGAAGTGGAAAGGGAAGAAGCATCTTTGAGGGAGGATCTCTATTCTGCTGATAGGAAATTTTCTGAATATTACAAT
GTCTTAGAGCAGATCCTTGGGATACTCATTAAGCTTGTCAAAGATCTGAAGTTGCAGCACCAACACAAATATGTGAGGCGCGAAAAACTTGGGTTAGTGA
AAGTTATGGTTCTGGAGCATGTTCTGCTAGTCGAGACTTATACTGAAGAGTCAATTCCTGCACTCCATAAAATAAGGAAATACCTGATAGAAGCTACTGA
AAAGGCCACTCTTGAATATAACAAAGCGGCCACACGCCTTAACGAGTATCTAGGCGTGGATCCCCAATTCGACATGATTGCAAGAGAATACCAGGAGATA
GTAGGGAAATTGCGGGATTTGCAATGGGCAATCGGTGAAGTCGAGAATGACGTAAACCAAAGCAAGTAA
AA sequence
>Lus10032639 pacid=23146268 polypeptide=Lus10032639 locus=Lus10032639.g ID=Lus10032639.BGIv1.0 annot-version=v1.0
MVKGLQGGGTQNLPPDVAQVMDQLERHCLAPDGSLVSKSVYYDLQLAREEMARERLRYLEAMAIYGEATAMVEEYQQAVSTPTLGGIRDVLYPQLSLKSH
SQVYETLEHRLVVAEAAQKLRLPLISKDGEVHEEEIEKWSVMSRSSLDSTSTSATISSSSNPLHYPNSSTTNNAASVMSSAFSPSVSDSVDPGVGGLANQ
YLGITPAYLWQTQLQQMPLMMDMAEYQMSLSCEIETRLKDKCDKLADAFVDDIDSASANPNSTAWLPERVKLITEEVEREEASLREDLYSADRKFSEYYN
VLEQILGILIKLVKDLKLQHQHKYVRREKLGLVKVMVLEHVLLVETYTEESIPALHKIRKYLIEATEKATLEYNKAATRLNEYLGVDPQFDMIAREYQEI
VGKLRDLQWAIGEVENDVNQSK

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT1G50710 unknown protein Lus10032639
[exp]
0 1
AT4G16340 SPK1 SPIKE1, guanyl-nucleotide exch... Lus10013253
[exp]
5.8 0.8935
AT4G16340 SPK1 SPIKE1, guanyl-nucleotide exch... Lus10030776
[exp]
10.4 0.8781
AT5G16210 HEAT repeat-containing protein... Lus10028491
[exp]
14.1 0.8541
AT1G64570 DUO3 DUO POLLEN 3, Homeodomain-like... Lus10002076
[exp]
15.7 0.8589
AT2G27060 Leucine-rich repeat protein ki... Lus10025541
[exp]
17.9 0.8491
AT1G27595 unknown protein Lus10028229
[exp]
19.8 0.8706
AT2G34680 AIR9 AUXIN-INDUCED IN ROOT CULTURES... Lus10023270
[exp]
20.5 0.8169
AT2G38040 CAC3 acetyl Co-enzyme a carboxylase... Lus10017184
[exp]
20.9 0.8274
AT4G24530 O-fucosyltransferase family pr... Lus10009276
[exp]
21.0 0.8196
AT1G60860 AGD2 ARF-GAP domain 2 (.1) Lus10030921
[exp]
23.0 0.7982

Lus10032639 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.