Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G14190 607 / 0 Glucose-methanol-choline (GMC) oxidoreductase family protein (.1) AT1G14185 606 / 0 Glucose-methanol-choline (GMC) oxidoreductase family protein (.1) AT3G56060 393 / 7e-131 Glucose-methanol-choline (GMC) oxidoreductase family protein (.1) AT5G51950 391 / 2e-130 Glucose-methanol-choline (GMC) oxidoreductase family protein (.1), Glucose-methanol-choline (GMC) oxidoreductase family protein (.2) AT1G72970 389 / 7e-129 HTH, EDA17 HOTHEAD, embryo sac development arrest 17, Glucose-methanol-choline (GMC) oxidoreductase family protein (.1), Glucose-methanol-choline (GMC) oxidoreductase family protein (.2) AT1G12570 387 / 2e-128 Glucose-methanol-choline (GMC) oxidoreductase family protein (.1) AT1G73050 386 / 2e-128 Glucose-methanol-choline (GMC) oxidoreductase family protein (.1) AT5G51930 355 / 5e-116 Glucose-methanol-choline (GMC) oxidoreductase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030459 [exp] 781 / 0 AT1G14185 605 / 0.0 Glucose-methanol-choline (GMC) oxidoreductase family protein (.1) Lus10030461 [exp] 764 / 0 AT1G14185 596 / 0.0 Glucose-methanol-choline (GMC) oxidoreductase family protein (.1) Lus10030456 [exp] 755 / 0 AT1G14185 634 / 0.0 Glucose-methanol-choline (GMC) oxidoreductase family protein (.1) Lus10030460 [exp] 749 / 0 AT1G14185 555 / 0.0 Glucose-methanol-choline (GMC) oxidoreductase family protein (.1) Lus10026606 [exp] 744 / 0 AT1G14190 554 / 0.0 Glucose-methanol-choline (GMC) oxidoreductase family protein (.1) Lus10030462 [exp] 739 / 0 AT1G14185 567 / 0.0 Glucose-methanol-choline (GMC) oxidoreductase family protein (.1) Lus10030463 [exp] 724 / 0 AT1G14185 504 / 5e-176 Glucose-methanol-choline (GMC) oxidoreductase family protein (.1) Lus10026607 [exp] 716 / 0 AT1G14185 605 / 0.0 Glucose-methanol-choline (GMC) oxidoreductase family protein (.1) Lus10030457 [exp] 712 / 0 AT1G14185 589 / 0.0 Glucose-methanol-choline (GMC) oxidoreductase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G168100 [exp] 698 / 0 AT1G14185 654 / 0.0 Glucose-methanol-choline (GMC) oxidoreductase family protein (.1) Potri.010G168200 [exp] 670 / 0 AT1G14190 598 / 0.0 Glucose-methanol-choline (GMC) oxidoreductase family protein (.1) Potri.008G087400 [exp] 668 / 0 AT1G14185 639 / 0.0 Glucose-methanol-choline (GMC) oxidoreductase family protein (.1) Potri.001G111500 [exp] 400 / 2e-133 AT1G12570 773 / 0.0 Glucose-methanol-choline (GMC) oxidoreductase family protein (.1) Potri.003G039000 [exp] 383 / 7e-127 AT1G72970 808 / 0.0 HOTHEAD, embryo sac development arrest 17, Glucose-methanol-choline (GMC) oxidoreductase family protein (.1), Glucose-methanol-choline (GMC) oxidoreductase family protein (.2) Potri.001G200800 [exp] 382 / 1e-126 AT1G72970 831 / 0.0 HOTHEAD, embryo sac development arrest 17, Glucose-methanol-choline (GMC) oxidoreductase family protein (.1), Glucose-methanol-choline (GMC) oxidoreductase family protein (.2) Potri.008G009600 [exp] 381 / 2e-126 AT1G73050 785 / 0.0 Glucose-methanol-choline (GMC) oxidoreductase family protein (.1) Potri.012G135200 [exp] 279 / 4e-88 AT5G51950 525 / 0.0 Glucose-methanol-choline (GMC) oxidoreductase family protein (.1), Glucose-methanol-choline (GMC) oxidoreductase family protein (.2) Potri.010G249501 [exp] 66 / 6e-13 AT1G73050 164 / 7e-49 Glucose-methanol-choline (GMC) oxidoreductase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF05199 [flax] [poplar] GMC_oxred_C GMC oxidoreductase CL0063 [flax] [poplar] NADP_Rossmann PF00732 [flax] [poplar] GMC_oxred_N GMC oxidoreductase
Representative CDS sequence Show only first row Show all	>Lus10032641 pacid=23146295 polypeptide=Lus10032641 locus=Lus10032641.g ID=Lus10032641.BGIv1.0 annot-version=v1.0 ATGAGGCTTCTAGCAGCTCGCATCCTGTTGCTGTTGCTGCTGCCTCTTCTTCTTCTTCTTCACTCATCTCATTCTGCTGGCCAGCCTCGAGGAAAAAATC CAAAACTTCCTTACATGACATCGAATGTCAACGAGGTAGCAGGCAAGTTGTTCGACTACATCGTGGTAGGTGGAGGAGCAGCCGGCTGCCCTATTGCAGC TACCCTCTCCGAGAAATTCTCCGTTCTACTAATTGAACGCGGTGGCTCGCCATATGGGAATCCGTGGATAACAAACAAGCGCTTCTACGGTTTCCCTTTG CTCCAAACTGACGAATTCTCCTCCGTCTCCCAATCATTCACTTCCAAAGAAGGCGTAGCCAACCTCAGAGGAAGAGTCCTCGGAGGATCAACGGCTATAA ATGGAGGGTTCTACAGTCGAGCTAGCGACGAGTACGTCAGGACTGTGGGTTGGGATGAAGAGCTGGTGAAGAAATCTTATGAGTGGGTGGAATCTAAGAT CGTTACTAAACCTGTGCTGACAACCTGGCAAGCTGCTTCACGATCTGGATTCCTTCAAGCTGGGATTCTTCCTGACAATGGATTCACCTGGGAACATATC CAAGGAACTAAGGTTGGTGGGTCTATTTTTGATAAATCGGGGAAGAGGCATACCTCTGCCGATCTTCTGCAGGCCGGAAGACCAGAAAACATCATTGTTC TCTTGAATGCAACGGTAAAGAGTGTCATATTCAACAATGGAGAATCAAATAAGACCATTGCTTGTGCCATCCAATTCATAAGCAGCAATGGCGGTGGAGA TCAAACCTATGAAGCTTACCTAAACCAACCAGAAAATCCAACTGGTTCCTCCTCCTCCTCCTCGGGGGACGTGATATTATCTGCAGGGGCAATAGGCAGC CCTCAAATCCTACTACTAAGTGGCATTGGACCTAAACCCCATCTCAACCAACTCAACATCCCAATCGTCCTCGAATCGAACCGGGTGGGACAGGAAGCAA AAGACAACCCCTCAGTTTCCATCCTGGTCGATTCGAAGCCCGAGTACAGAGTCCCCGACACTACACAAGTAGCAGGAATAACAAAAGGATCCAAATTCAT CATCGAAAGCCTCATCCTACCGTTCAGCTTCAACACTACAAGGGTCGTGATAGCAATCAAGATAGCAGCCCCGAAATCAAAAGGGAAGTTGGAACTGAAC TCGACCGACCCCAGAAAGAACCCTCAAGTCTCGTACAATTACTTGGAGTCGGAGAAAGACATGGATGGGTGTGTGGAGATGAGCAAGCTGATGAATAAGG TTGCCAGTTCTCAAGCTGTGGAGACCTTCCCGGGGAATGTAGCTCAGGCTAACTTAACGACGAATCCTGACGAGCTGCGGACTCTTTGCAGGAGGAATGT CAGGACTTTCTATCATTACCATGGTGGCTGTGGAGTTGGATCAGTTGTTGGCCAGGATTATAGAGTGCTTGGTGTCCAAGGTTTGAGAGTTGTTGATGGG TCGACTTTCCTCGAGTCGCCTGGGACGAATCCTATGGCTACCCTTCTGATGCTTGGTAGATACCAAGGGCTCAAGATTCTTGATGAAAGGGAGAAAAATG GTCATCATCAGTAA
AA sequence Show only first row Show all	>Lus10032641 pacid=23146295 polypeptide=Lus10032641 locus=Lus10032641.g ID=Lus10032641.BGIv1.0 annot-version=v1.0 MRLLAARILLLLLLPLLLLLHSSHSAGQPRGKNPKLPYMTSNVNEVAGKLFDYIVVGGGAAGCPIAATLSEKFSVLLIERGGSPYGNPWITNKRFYGFPL LQTDEFSSVSQSFTSKEGVANLRGRVLGGSTAINGGFYSRASDEYVRTVGWDEELVKKSYEWVESKIVTKPVLTTWQAASRSGFLQAGILPDNGFTWEHI QGTKVGGSIFDKSGKRHTSADLLQAGRPENIIVLLNATVKSVIFNNGESNKTIACAIQFISSNGGGDQTYEAYLNQPENPTGSSSSSSGDVILSAGAIGS PQILLLSGIGPKPHLNQLNIPIVLESNRVGQEAKDNPSVSILVDSKPEYRVPDTTQVAGITKGSKFIIESLILPFSFNTTRVVIAIKIAAPKSKGKLELN STDPRKNPQVSYNYLESEKDMDGCVEMSKLMNKVASSQAVETFPGNVAQANLTTNPDELRTLCRRNVRTFYHYHGGCGVGSVVGQDYRVLGVQGLRVVDG STFLESPGTNPMATLLMLGRYQGLKILDEREKNGHHQ

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G14185			Glucose-methanol-choline (GMC)...		Lus10032641 [exp]	0	1
AT3G48280		CYP71A25	"cytochrome P450, family 71, s...		Lus10043313 [exp]	1.4	0.9768
AT3G48280		CYP71A25	"cytochrome P450, family 71, s...		Lus10019457 [exp]	1.7	0.9711
AT1G18140		LAC1, ATLAC1	laccase 1 (.1)		Lus10040936 [exp]	2.0	0.9746
AT1G29860	WRKY	ATWRKY71, WRKY7...	WRKY DNA-binding protein 71 (....		Lus10004537 [exp]	6.5	0.9602
AT1G60680		AGD2	NAD(P)-linked oxidoreductase s...		Lus10004399 [exp]	7.1	0.9679
AT5G39150			RmlC-like cupins superfamily p...		Lus10033767 [exp]	8.0	0.9571
AT2G46760			D-arabinono-1,4-lactone oxidas...		Lus10012609 [exp]	8.9	0.9435
AT3G21360			2-oxoglutarate (2OG) and Fe(II...		Lus10037585 [exp]	9.4	0.9624
AT3G26270		CYP71B25	"cytochrome P450, family 71, s...		Lus10019463 [exp]	9.8	0.9608
AT2G47140		AtSDR5	short-chain dehydrogenase redu...		Lus10021257 [exp]	10.4	0.9692

Compare expression of checked genes

Lus10032641 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.