Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G26965 154 / 1e-47 NADH:ubiquinone oxidoreductase, 17.2kDa subunit (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G122100 [exp] 177 / 1e-56 AT4G26965 217 / 1e-72 NADH:ubiquinone oxidoreductase, 17.2kDa subunit (.1.2) Potri.001G109600 [exp] 166 / 3e-52 AT4G26965 198 / 2e-65 NADH:ubiquinone oxidoreductase, 17.2kDa subunit (.1.2) Potri.019G051400 [exp] 40 / 0.0004 AT3G03100 269 / 1e-93 NADH:ubiquinone oxidoreductase, 17.2kDa subunit (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF05071 [flax] [poplar] NDUFA12 NADH ubiquinone oxidoreductase subunit NDUFA12
Representative CDS sequence Show only first row Show all	>Lus10032642 pacid=23146239 polypeptide=Lus10032642 locus=Lus10032642.g ID=Lus10032642.BGIv1.0 annot-version=v1.0 ATGTCGAAGCTTTTCGCAAGAATTTCTGGGTACTTCAGCAACCGGGCTCTGGCTGGGATGGACAGAGCAGGGAACCGATACTTCTCCAGAATTGAAGAGG TTGATGGCGTAACGAAAGAGAAAAGATTTGTGATATTTAAAGGAGGAGAGCATGATCCAACTACAGTCCCAGTTGAATGGATATCCTGGCTAAATGGACA GCGGAAAAAGGCTCCAACTCCTGAGGAAATGATGATGTTAGAAGCAAGGCGTGAACAAGTGAGGCAAAATGTTGCTCTTCTGAAGAAAGAAGAAGAGGAA AGAAAAGTCAAAGAGGGAACTTCCCGTAAAGTCGTTACTACTGGTAAGGCAGACTTGAAGAGTTTCATGAGACAGTTAACGGCTGTTGGAGAAGGTCACT TAGCTGAGAAGGAAGCAGAGGGGGCAGAAAGATTAAGACGCACGTTGAAGAAGAAGGAACAAATGGAAGCCAGAAAGGCAATGGTTACAACCGTGGTCGT TCTTATTGTCATGATGACAACTGTGATGATTACCGGTTGCAACGCTGTTCGAGCTGTCGGCGACAACAACGACGCCACCAGTCAATCGTCGGAGCCAGCC ATCCATGGTTTGATGTTACTCTTGTAA
AA sequence Show only first row Show all	>Lus10032642 pacid=23146239 polypeptide=Lus10032642 locus=Lus10032642.g ID=Lus10032642.BGIv1.0 annot-version=v1.0 MSKLFARISGYFSNRALAGMDRAGNRYFSRIEEVDGVTKEKRFVIFKGGEHDPTTVPVEWISWLNGQRKKAPTPEEMMMLEARREQVRQNVALLKKEEEE RKVKEGTSRKVVTTGKADLKSFMRQLTAVGEGHLAEKEAEGAERLRRTLKKKEQMEARKAMVTTVVVLIVMMTTVMITGCNAVRAVGDNNDATSQSSEPA IHGLMLLL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G26965			NADH:ubiquinone oxidoreductase...		Lus10032642 [exp]	0	1
AT5G17060		ATARFB1B	ADP-ribosylation factor B1B (....		Lus10009571 [exp]	3.3	0.8681
AT2G19790			SNARE-like superfamily protein...		Lus10035004 [exp]	4.9	0.8599
AT1G26550			FKBP-like peptidyl-prolyl cis-...		Lus10019084 [exp]	5.5	0.8564
AT5G55290			ATPase, V0 complex, subunit E ...		Lus10032570 [exp]	6.0	0.8448
AT1G07960		ATPDIL5-1	PDI-like 5-1 (.1.2.3)		Lus10036125 [exp]	6.3	0.8528
AT1G76200			unknown protein		Lus10012279 [exp]	12.4	0.8385
AT3G45020			Ribosomal L18p/L5e family prot...		Lus10021433 [exp]	13.0	0.8484
AT1G64750		DSS1(I), ATDSS1...	deletion of SUV3 suppressor 1(...		Lus10030583 [exp]	13.7	0.8315
AT4G17360			Formyl transferase (.1)		Lus10007482 [exp]	14.7	0.7882
AT3G03070			NADH-ubiquinone oxidoreductase...		Lus10039147 [exp]	15.5	0.8257

Compare expression of checked genes

Lus10032642 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.