Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G54970 59 / 4e-12 unknown protein AT4G26960 55 / 2e-10 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10043108 [exp] 202 / 2e-68 AT5G54970 66 / 2e-14 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G052300 [exp] 59 / 3e-12 AT5G54970 60 / 2e-12 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10032643 pacid=23146351 polypeptide=Lus10032643 locus=Lus10032643.g ID=Lus10032643.BGIv1.0 annot-version=v1.0 ATGGTGGCCCCTTCCAGATCTCCCAACCAACCCCACTGTTGCTTCCACCGCTACCTCAAGCCGGGAGCCCTCGCCCGTCTCAGAGACTCCAGAATCGGCG CCGCCAGATCTCTTCAACCCAAGAAGTCCCCTCCTCCCGCCGATCTTCAAACTCCGATGCAATCTGCTGACGATGATAATGATATTCCCTTCCTTTTGGC CAAGCTCTACAGACCCCAATCCCTAAACAGGAAGAGACTCGTCGCCGCTAGATCTGTTCTGTTCGCCGGGTTGCCTTCTCCTTCCAATCCGGCGTTGGAT CTGACCAATCGAGGCGATGGTGGTATCAGTCATAGCAATAGTAATAATGGGTCTACGATGGCTGCGTTGAATAGCGATGCAGTTGTTGTCGCTCATTGA
AA sequence Show only first row Show all	>Lus10032643 pacid=23146351 polypeptide=Lus10032643 locus=Lus10032643.g ID=Lus10032643.BGIv1.0 annot-version=v1.0 MVAPSRSPNQPHCCFHRYLKPGALARLRDSRIGAARSLQPKKSPPPADLQTPMQSADDDNDIPFLLAKLYRPQSLNRKRLVAARSVLFAGLPSPSNPALD LTNRGDGGISHSNSNNGSTMAALNSDAVVVAH

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G54970			unknown protein		Lus10032643 [exp]	0	1
AT5G40830		ATRAD3, ATATR	S-adenosyl-L-methionine-depend...		Lus10007385 [exp]	2.0	0.9672
AT1G62500			Bifunctional inhibitor/lipid-t...		Lus10032262 [exp]	4.6	0.9508
					Lus10042887 [exp]	5.1	0.9509
AT5G55130		SIR1, CNX5	SIRTINOL RESISTANT 1, "co-fact...		Lus10022510 [exp]	6.0	0.9470
AT2G45290			Transketolase (.1)		Lus10004750 [exp]	8.1	0.9487
AT3G63250		HMT-2, ATHMT-2 ...	HOMOCYSTEINE METHYLTRANSFERASE...		Lus10006901 [exp]	10.0	0.9421
AT2G37270		ATRPS5B	ribosomal protein 5B (.1.2)		Lus10000946 [exp]	11.5	0.9489
AT2G28720			Histone superfamily protein (....		Lus10028826 [exp]	13.0	0.9124
AT5G52860		ABCG8	ATP-binding cassette G8, ABC-2...		Lus10027545 [exp]	13.4	0.9219
AT2G35350		PLL1	poltergeist like 1 (.1)		Lus10004554 [exp]	13.9	0.9303

Compare expression of checked genes

Lus10032643 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.