Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G27020 868 / 0 unknown protein AT5G54870 847 / 0 unknown protein AT1G70160 726 / 0 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10043107 [exp] 1047 / 0 AT4G27020 849 / 0.0 unknown protein Lus10040054 [exp] 930 / 0 AT4G27020 868 / 0.0 unknown protein Lus10010721 [exp] 740 / 0 AT1G70160 880 / 0.0 unknown protein Lus10029209 [exp] 729 / 0 AT1G70160 872 / 0.0 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G137700 [exp] 897 / 0 AT4G27020 894 / 0.0 unknown protein Potri.001G424500 [exp] 885 / 0 AT4G27020 879 / 0.0 unknown protein Potri.010G036900 [exp] 736 / 0 AT1G70160 852 / 0.0 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10032644 pacid=23146235 polypeptide=Lus10032644 locus=Lus10032644.g ID=Lus10032644.BGIv1.0 annot-version=v1.0 ATGGAGCCATTACCCACGACGATGGCTTCCTCCGCGACCGCCTCCATCGTCTTCTTGTTCTGCTTGCTCTTTTCCGTCACCAAAGCTTCTTCCTTGGGAA CACCGTTTCACGCAAGAGACGTGCTGCCGTTCTTGCCCAAGGAAGTTTCGTGGCCAGTCCTCAATTACCTAAACAGTGCGGTGGATCTTCTACCTACTTT TGTCGGCGCTGCCTCGTCGTCCGGTAACACGGTGGATTGGAAAGGTGCCTGTTTTTACCAAAACGAGGCTTGGATAGAGTTCCACAATAAGACTGGTAGC CAATTTGGCGGCGGCACACTTCATATTAAGGTTAGCAATGCTCATAGCTGGACATGCATGGATCTTTACCTCTTTGCAACTCCATACCGCGTCACTTGGG ATTACTATATTATTTCCAGGGAGCATACTCTGGAATTTGATGAGTGGGAAGGAAGAGCTGAGTATGAATATGTAAAAAGAAAAGGGGTCTCGATTTTTCT GATGCAAGCAGGGATGTTGGGCACCCTCCGCGGTCTATGGGATGTCTTCCCCTTATTCACAAACACTAAATGGGGAGAAAATGCCAATCTTGCATTCCTC AATAAACACATGGGTGCCAAGTTTGAGCCTCGTCCTCAACCATGGGTCACCAATATCACTGTTGACGAGATTCAATCCGGGGACTTTCTTGCAATATCGA AGATTCGTGGAAGATGGGGCGGCTTTGAAACTTTGGAGAAGTGGGTGAGTGGAGCTTATGCTGGCCACTCTGCTGTTTGCTTGAGAGACTCTGAAGGGAA ATTATGGGTTGGTGAATCCGGGCATGAGAATGAAGAGGGAGAAGATGTCGTTGCGATAATACCTTGGGATGAGTGGTGGGAATTTGAACTGAATGAAGAT GACTCCAATCCTCACATTGCTTTGCTTCCTTTGTGCCCAGAACTCCGATCCAAGTTTAATGAGACAGCTGCTTGGGAGTATGCATTAAGCATGAATGGTT TGCCTTATGGATACCACAACTTGATATTTGGCTGGATAGACACTATTAGTGGCAACTTTCCACCTCCGCTAGATGCTCATCTGGTAGCTTCTGTTATGAC AATTTGGAGCCAGATGAAACCTGCATATGCTGGAAACATGTGGAATGAAGCCTTGAACAAGCGACTCGGAACCGAGGGGCTTGATTTGTCTGCTATCATA GTAGAAACAGAGAAGCGAGGGTCATCCTTTGCAGAACTGCTAACAATTCCGGAACAGGATGACTGGGTTTACTCCGATGGGAAGTCCACCTCCTGTGTTG CTTTCATTCTTGAAATGTACAAAGAAGCAGGACTCTTCGACCCGATCTCCAGCTCGATACAAGTAACCGAGTTCACGATCAAAGATGCATACTCTCTCAA TTTTTTCGAGACAAATGCAAGCCGGCTGCCATCATGGTGCAATGACGGGGATGATGTCGAACTTCCCTATTGCCAGATTAAAGGACAATACAGAATGGAG TTACCAGGTTACAACACCATGGATCCTTATCCTCGCATGAATGAGATGTGTCCATCTCTTCCGCCGGACTACTTCAGGCCGGAGAGTTGCTAG
AA sequence Show only first row Show all	>Lus10032644 pacid=23146235 polypeptide=Lus10032644 locus=Lus10032644.g ID=Lus10032644.BGIv1.0 annot-version=v1.0 MEPLPTTMASSATASIVFLFCLLFSVTKASSLGTPFHARDVLPFLPKEVSWPVLNYLNSAVDLLPTFVGAASSSGNTVDWKGACFYQNEAWIEFHNKTGS QFGGGTLHIKVSNAHSWTCMDLYLFATPYRVTWDYYIISREHTLEFDEWEGRAEYEYVKRKGVSIFLMQAGMLGTLRGLWDVFPLFTNTKWGENANLAFL NKHMGAKFEPRPQPWVTNITVDEIQSGDFLAISKIRGRWGGFETLEKWVSGAYAGHSAVCLRDSEGKLWVGESGHENEEGEDVVAIIPWDEWWEFELNED DSNPHIALLPLCPELRSKFNETAAWEYALSMNGLPYGYHNLIFGWIDTISGNFPPPLDAHLVASVMTIWSQMKPAYAGNMWNEALNKRLGTEGLDLSAII VETEKRGSSFAELLTIPEQDDWVYSDGKSTSCVAFILEMYKEAGLFDPISSSIQVTEFTIKDAYSLNFFETNASRLPSWCNDGDDVELPYCQIKGQYRME LPGYNTMDPYPRMNEMCPSLPPDYFRPESC

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G27020			unknown protein		Lus10032644 [exp]	0	1
AT2G25290		Phox1	Phox1, Octicosapeptide/Phox/Be...		Lus10008035 [exp]	2.4	0.8433
AT5G51070		SAG15, CLPD, ER...	SENESCENCE ASSOCIATED GENE 15,...		Lus10043014 [exp]	3.0	0.8611
AT2G46320			Mitochondrial substrate carrie...		Lus10012635 [exp]	8.5	0.7483
AT5G02810		APRR7, PRR7	pseudo-response regulator 7 (....		Lus10019899 [exp]	8.8	0.8144
AT2G20920			Protein of unknown function (D...		Lus10025079 [exp]	10.2	0.8021
AT4G27020			unknown protein		Lus10043107 [exp]	10.4	0.8079
AT3G04460		PEX12, ATPEX12,...	ABERRANT PEROXISOME MORPHOLOGY...		Lus10032777 [exp]	11.0	0.7896
AT3G16785		PLDZ1, PLDZETA1...	PHOSPHOLIPASE D ZETA1, PHOSPHO...		Lus10029873 [exp]	11.7	0.7739
AT3G09850			D111/G-patch domain-containing...		Lus10036327 [exp]	12.2	0.8063
AT5G64500			Major facilitator superfamily ...		Lus10011580 [exp]	13.3	0.7659

Compare expression of checked genes

Lus10032644 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.