Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G54900 110 / 6e-28 ATRBP45A RNA-binding protein 45A (.1) AT5G19350 106 / 3e-26 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) AT4G27000 103 / 3e-25 ATRBP45C RNA-binding (RRM/RBD/RNP motifs) family protein (.1) AT3G19130 100 / 4e-24 ATRBP47B RNA-binding protein 47B (.1) AT1G11650 97 / 3e-23 ATRBP45B RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) AT1G49600 96 / 3e-22 ATRBP47A RNA-binding protein 47A (.1) AT1G47490 76 / 7e-16 ATRBP47C RNA-binding protein 47C (.1.2) AT1G47500 77 / 8e-16 ATRBP47C' RNA-binding protein 47C' (.1) AT5G51300 56 / 2e-08 splicing factor-related (.1.2.3) AT4G14300 50 / 5e-07 RNA-binding (RRM/RBD/RNP motifs) family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10043106 [exp] 182 / 1e-54 AT4G27000 341 / 4e-114 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Lus10031277 [exp] 107 / 1e-26 AT5G19350 558 / 0.0 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Lus10031844 [exp] 107 / 2e-26 AT5G19350 556 / 0.0 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Lus10002063 [exp] 104 / 2e-25 AT4G27000 275 / 1e-89 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Lus10018345 [exp] 103 / 4e-25 AT1G11650 439 / 1e-153 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Lus10012070 [exp] 97 / 5e-23 AT1G49600 470 / 5e-165 RNA-binding protein 47A (.1) Lus10021754 [exp] 92 / 7e-21 AT1G47490 509 / 1e-179 RNA-binding protein 47C (.1.2) Lus10012071 [exp] 75 / 3e-15 AT1G49600 442 / 2e-155 RNA-binding protein 47A (.1) Lus10014029 [exp] 70 / 2e-13 AT3G19130 455 / 1e-160 RNA-binding protein 47B (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G138400 [exp] 112 / 1e-28 AT4G27000 463 / 1e-162 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Potri.001G423400 [exp] 111 / 6e-28 AT4G27000 474 / 2e-166 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Potri.009G054400 [exp] 105 / 6e-26 AT5G19350 554 / 0.0 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Potri.004G017200 [exp] 96 / 2e-22 AT1G11650 423 / 4e-147 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Potri.014G034600 [exp] 96 / 3e-22 AT1G47490 439 / 2e-152 RNA-binding protein 47C (.1.2) Potri.002G128100 [exp] 95 / 5e-22 AT1G47490 404 / 6e-139 RNA-binding protein 47C (.1.2) Potri.004G143400 [exp] 94 / 8e-22 AT3G19130 480 / 2e-168 RNA-binding protein 47B (.1) Potri.009G105300 [exp] 92 / 3e-21 AT3G19130 479 / 6e-168 RNA-binding protein 47B (.1) Potri.003G107200 [exp] 54 / 7e-08 AT5G51300 830 / 0.0 splicing factor-related (.1.2.3) Potri.001G126400 [exp] 53 / 9e-08 AT5G51300 790 / 0.0 splicing factor-related (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0221 [flax] [poplar] RRM PF00076 [flax] [poplar] RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Representative CDS sequence Show only first row Show all	>Lus10032645 pacid=23146375 polypeptide=Lus10032645 locus=Lus10032645.g ID=Lus10032645.BGIv1.0 annot-version=v1.0 ATGATGCAGCAGCCGGGAGCTGGCGGCGTAGCGGATCCGCAGTATCAGCAGCAACAACAACAGCAGTGGATGATGATGCAGCAACAACAGCAGACGCCGG TCCCTCCTCCGGCTGATTGGATTCCTCCACCTGTCCCACCGCCAACACAGTATGGTGTTACCCAGAGCCCTGGTGCTGGTGGGGGTTCGGGCGACGTTAA GTCGTTGTGGATCGGAGATTTACAGCCGTGGATGGACGAGAACTACCTTACCAACACCTTTTCTGGCACTGGAGAGGTAGTTTCGGCCAAGGTTATTCGT AATAAGCTAACAAATGTGCCGGAAGGATATGGCTTTATTGAGTTTGTCAGTCGTACAGCAGCAGAGAGGATCCTGCAGACTTACACAAAGTTGTCACAGA CAGGACCCATGCGAATTGGTCCTGCTGCTTCTAAGAAACCTGCGATCCAGCAATTTCAGACTGCAGCTACCTACCAGAATGTTCAGGCTCAAGGTGGGCA GGGTGAGAGCGATCCAAATAATACAACAGCTCAACCAGATCAAAGCCAGTATGGTGGATATTATGGATATGCTCAAGGTTATGATGCATATGGGTACGCA GCTGCTCCACAGGACCCTAACATGTACTATGGAGGGTACCCTGGATACGCAGGAAACTACCAGCAGGACGGAGGTTATCAACAGCCGCCACAGCAGGTTT ACCAGCAGCAGCCACCTCAGAAAACATACACTTGTCATCCTGAAATTCCCCCCCATTTCATCAGCTTGCCTTTAGTGGAGACTGGAGCTAGAGCTGCTGC GCTCCTGATTTTCGCGGATGAATAG
AA sequence Show only first row Show all	>Lus10032645 pacid=23146375 polypeptide=Lus10032645 locus=Lus10032645.g ID=Lus10032645.BGIv1.0 annot-version=v1.0 MMQQPGAGGVADPQYQQQQQQQWMMMQQQQQTPVPPPADWIPPPVPPPTQYGVTQSPGAGGGSGDVKSLWIGDLQPWMDENYLTNTFSGTGEVVSAKVIR NKLTNVPEGYGFIEFVSRTAAERILQTYTKLSQTGPMRIGPAASKKPAIQQFQTAATYQNVQAQGGQGESDPNNTTAQPDQSQYGGYYGYAQGYDAYGYA AAPQDPNMYYGGYPGYAGNYQQDGGYQQPPQQVYQQQPPQKTYTCHPEIPPHFISLPLVETGARAAALLIFADE

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G54900		ATRBP45A	RNA-binding protein 45A (.1)		Lus10032645 [exp]	0	1
AT1G29880			glycyl-tRNA synthetase / glyci...		Lus10029203 [exp]	14.0	0.8836
AT4G14300			RNA-binding (RRM/RBD/RNP motif...		Lus10023740 [exp]	17.1	0.8576
AT2G20360			NAD(P)-binding Rossmann-fold s...		Lus10022859 [exp]	21.7	0.8502
AT1G10580			Transducin/WD40 repeat-like su...		Lus10030620 [exp]	23.9	0.8741
AT2G03890		UBDKGAMMA7, ATP...	UBIQUITIN-LIKE DOMAIN KINASE G...		Lus10019197 [exp]	29.6	0.7689
AT5G49400			zinc knuckle (CCHC-type) famil...		Lus10037744 [exp]	34.3	0.8193
AT5G49400			zinc knuckle (CCHC-type) famil...		Lus10037745 [exp]	36.7	0.8255
AT4G19006			Proteasome component (PCI) dom...		Lus10012120 [exp]	37.2	0.8583
AT2G41500		EMB2776, LIS	LACHESIS, WD-40 repeat family ...		Lus10021059 [exp]	38.3	0.8382
AT4G16270			Peroxidase superfamily protein...		Lus10037786 [exp]	47.8	0.7875

Compare expression of checked genes

Lus10032645 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.