Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G55100 380 / 1e-118 SWAP (Suppressor-of-White-APricot)/surp domain-containing protein (.1), SWAP (Suppressor-of-White-APricot)/surp domain-containing protein (.2) AT1G14650 46 / 0.0001 SWAP (Suppressor-of-White-APricot)/surp domain-containing protein / ubiquitin family protein (.1), SWAP (Suppressor-of-White-APricot)/surp domain-containing protein / ubiquitin family protein (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10043105 [exp] 1016 / 0 AT5G55100 504 / 1e-165 SWAP (Suppressor-of-White-APricot)/surp domain-containing protein (.1), SWAP (Suppressor-of-White-APricot)/surp domain-containing protein (.2) Lus10025704 [exp] 60 / 2e-09 AT1G14650 346 / 4e-114 SWAP (Suppressor-of-White-APricot)/surp domain-containing protein / ubiquitin family protein (.1), SWAP (Suppressor-of-White-APricot)/surp domain-containing protein / ubiquitin family protein (.2) Lus10035958 [exp] 57 / 4e-08 AT1G14650 886 / 0.0 SWAP (Suppressor-of-White-APricot)/surp domain-containing protein / ubiquitin family protein (.1), SWAP (Suppressor-of-White-APricot)/surp domain-containing protein / ubiquitin family protein (.2) Lus10013966 [exp] 48 / 4e-05 AT1G14650 672 / 0.0 SWAP (Suppressor-of-White-APricot)/surp domain-containing protein / ubiquitin family protein (.1), SWAP (Suppressor-of-White-APricot)/surp domain-containing protein / ubiquitin family protein (.2) Lus10015391 [exp] 44 / 6e-05 AT1G14650 119 / 4e-32 SWAP (Suppressor-of-White-APricot)/surp domain-containing protein / ubiquitin family protein (.1), SWAP (Suppressor-of-White-APricot)/surp domain-containing protein / ubiquitin family protein (.2) Lus10015703 [exp] 46 / 0.0001 AT3G52120 477 / 2e-166 SWAP (Suppressor-of-White-APricot)/surp domain-containing protein / D111/G-patch domain-containing protein (.1), SWAP (Suppressor-of-White-APricot)/surp domain-containing protein / D111/G-patch domain-containing protein (.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G356800 [exp] 545 / 0 AT5G55100 420 / 6e-133 SWAP (Suppressor-of-White-APricot)/surp domain-containing protein (.1), SWAP (Suppressor-of-White-APricot)/surp domain-containing protein (.2) Potri.007G070700 [exp] 52 / 3e-06 AT1G14650 810 / 0.0 SWAP (Suppressor-of-White-APricot)/surp domain-containing protein / ubiquitin family protein (.1), SWAP (Suppressor-of-White-APricot)/surp domain-containing protein / ubiquitin family protein (.2) Potri.005G094600 [exp] 48 / 4e-05 AT1G14650 814 / 0.0 SWAP (Suppressor-of-White-APricot)/surp domain-containing protein / ubiquitin family protein (.1), SWAP (Suppressor-of-White-APricot)/surp domain-containing protein / ubiquitin family protein (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01805 [flax] [poplar] Surp Surp module PF09750 [flax] [poplar] DRY_EERY Alternative splicing regulator
Representative CDS sequence Show only first row Show all	>Lus10032646 pacid=23146245 polypeptide=Lus10032646 locus=Lus10032646.g ID=Lus10032646.BGIv1.0 annot-version=v1.0 ATGGCTCTGGAAGTTGTAGGCAGGCACGCCCTTTTCTTCGATGACGATGCTATGGCCGCGTTCACCAACTCCAGGGACGCACTGGTCGAATGGAACTCTC TTTCAATCGACCGTTATGATGTCCGCCATCTCCTCACTAGCCCTCTTCCATCTCGTGTTCGCCGCAAACACCGGCCGGACGATCCTCTCGAATCTGAGCT CGATTACGAGCGGTATCTCGATTTGCAGTCCAGTCCCGATGAACAAGACATCGAAAATGACGCAAAATTGGCCAATGATGGTGGCTACAATGCAGTGGGA TTTTCATATGGGGAGTCCAGTGCATCTGTCGACCCAAAGAATCTAGATGCTGATTCTTGTTTTCGCCCTCCATTCTCAGTACCTGAACACTTGATTCAGA AGCTGCCTCCAACTGAAAAGCTGCATCAGATTATCGCAAGGACTGCCATGTTTGTGAGCGCACATGGAGCCCAGTCAGAAATTGTTTTGAGAGTTAAACA AGGAGGCAATCCATCATTTGGCTTCCTGATGCCTCATCATGATCTTCACCCATACTTTAGGTTTCTTATCGATCATCAAGAACTTCTGAAGTCTGACATC GATGGGAAATCAGCTGAAGACGAGAATAAGTCTATGGCTGGTCTTGAAGAGGCTGGTGGAGCTTTGTCGCTGCTTGGTACTGTCTATGACTCCGGGGAGG ATGAAGAAATTGCTTCTGGGAATACTTTTTCGCTTAAGAAAGGCGATCTTCAAAAGGCTGTTTGTGCAGATAAATCTATAACTTCTGAAGGATTACAAGA ACCTGGTTGTCCTGTAATCCCTGCGACAAGAGATGAAACAGTTATCAAGAATCATATTTCTTCTTTGAAAGAAACACCTGTGGTAATAAGAAAAGGCCAT AGCATTAACAAAATTAAAGCAGGAACTATTACTGGGTTGAAACAAGATGGTGGTTCTTCAGTGCCCGTTCCTTCAATAGACGAGAAAGTACAGTCTTCTC CTTTAAGTGACCCTACAAAGACTGAAATTCCTATACTGCAGCTTCCATCTGATATGAAGAGGGTAGTTGAGAAGATTGTTGAGTTTATTCTCCGGAATGG GAAAGAATTCGAAGCAGTTCTTGTTCAGCAGGATGCTAACTACAAGAGATTTCCATTCCTTTTGCCTTCAAACCAGTATCATCCGTACTACCTAAAGGCT CTTCAAAATGCTCAAGAGCCACGATTGGATTCTCAGAGCTACAATTCTGAGAAGCATGTTTCATCTGGTGTTTCCACGGATAAGATAACTTCAGGCAAAG AAAGTGATTCCTCGTCTATTCCCTCTGACGTACCTTATGATTCAGATAGGAAAGAGAAATTTAAAATGGTGATTGGAAAGTCCAAGAAAGAAGGAACAGA TACAAGTTCAAAACCCTCTGAGTCACAAGTTGGAGTCAGTATGGATGCAGAAGCAGTTGCTGCTATCTTGCAAGCTGCCAGAAGAGGCATCAGGAATCCT AACTTGGAAATAGTTGCTAAGAGTTCTCGTATTAGTAGTGACGGTGGCGAGTCCTCTAGTTTGAATAGCCTTCTTTCATCTCGACCTCCAACTTCAACCC GAGCTAATGATGCAGAGCCTGGTGTTTCTGTGTCTCTAGCTAAGGCCACTGCAAAAAATGCTGCAATTGCTGCAGCAAATGAAGCTGATTCCTCTGAAGC AAGCCTGACAAGAGAACAGAAGCTTAAAGCTGAAAGGTTGAGACGAGCAAAGATGTTTGCTGCAATGATAAGAAGTGGAGCAGCTCCGTTGAAAAGTGAA CATGTGCGAGGTCTGTCCGTTGATCCACCTGTTCCTGGTTTATCAAGGTCAGGAGGCTCGGCCGCTATTTTGGTGGAAAGAGAAAAGGAAGGAAGTACGG TCCCTAGGAATGTTGGAAGTCGTGAGGATAGAGAACTAGTTGATGCATCCAATGATAGACGATCCAAGAGGAAGTACCGTGACAAATCCGGGAAGGTTGA AGAAGACAAGGAAGATGTTAGAGAAGACGGAGATTCTAAGCACTCAAGGAAGAAGAAGAGGTCCCACGGCTCATCACGTCATAGTAGGGAAACTAGTAGG AAGCATAAAAGAAAGCATTCATCTTCAAAGGACAGAGATTCGCTAGGCCGAAACAAGTATGAAGGCAGCTCGGAAGATGAGCAGGAGTGCTCGATGAATC ATCACCCCAACTCTTCCGAGGATGAATATAGGCATTCTAGACGTAAGCACAAGAAAGACATGTCTTCTAAAGACGAGCAAGATGAGAACTATAGGAGGCA CTCTCGCTCCAGAAGGCGCAAAGATGATACTTACTCTGATGATGAGCATTATCGGCACAAGAAGCTTGATCGGTCGTCAAATAGACATAAACAAGATGAT GATAATGCTTCCGATAGTGGTGATGAAAATGCTCATGGTGTGCGTGAAGTAAGATTGGGAGATGATGGTGATAAGACAGAGAGCGGGGTGGAGGTTAGAG GAGGTCGGGACGCCATTGATGTTTCTGATGACCTTAGGGCTAAAGTTCGTGCAATGTTGGAAACCATCTAA
AA sequence Show only first row Show all	>Lus10032646 pacid=23146245 polypeptide=Lus10032646 locus=Lus10032646.g ID=Lus10032646.BGIv1.0 annot-version=v1.0 MALEVVGRHALFFDDDAMAAFTNSRDALVEWNSLSIDRYDVRHLLTSPLPSRVRRKHRPDDPLESELDYERYLDLQSSPDEQDIENDAKLANDGGYNAVG FSYGESSASVDPKNLDADSCFRPPFSVPEHLIQKLPPTEKLHQIIARTAMFVSAHGAQSEIVLRVKQGGNPSFGFLMPHHDLHPYFRFLIDHQELLKSDI DGKSAEDENKSMAGLEEAGGALSLLGTVYDSGEDEEIASGNTFSLKKGDLQKAVCADKSITSEGLQEPGCPVIPATRDETVIKNHISSLKETPVVIRKGH SINKIKAGTITGLKQDGGSSVPVPSIDEKVQSSPLSDPTKTEIPILQLPSDMKRVVEKIVEFILRNGKEFEAVLVQQDANYKRFPFLLPSNQYHPYYLKA LQNAQEPRLDSQSYNSEKHVSSGVSTDKITSGKESDSSSIPSDVPYDSDRKEKFKMVIGKSKKEGTDTSSKPSESQVGVSMDAEAVAAILQAARRGIRNP NLEIVAKSSRISSDGGESSSLNSLLSSRPPTSTRANDAEPGVSVSLAKATAKNAAIAAANEADSSEASLTREQKLKAERLRRAKMFAAMIRSGAAPLKSE HVRGLSVDPPVPGLSRSGGSAAILVEREKEGSTVPRNVGSREDRELVDASNDRRSKRKYRDKSGKVEEDKEDVREDGDSKHSRKKKRSHGSSRHSRETSR KHKRKHSSSKDRDSLGRNKYEGSSEDEQECSMNHHPNSSEDEYRHSRRKHKKDMSSKDEQDENYRRHSRSRRRKDDTYSDDEHYRHKKLDRSSNRHKQDD DNASDSGDENAHGVREVRLGDDGDKTESGVEVRGGRDAIDVSDDLRAKVRAMLETI

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G55100			SWAP (Suppressor-of-White-APri...		Lus10032646 [exp]	0	1
AT1G79610		ATNHX6	Na+/H+ antiporter 6, ARABIDOPS...		Lus10039131 [exp]	1.0	0.9577
AT4G24740		AME1, AFC2	FUS3-complementing gene 2 (.1....		Lus10006230 [exp]	1.4	0.9562
AT5G28850			Calcium-binding EF-hand family...		Lus10021174 [exp]	2.0	0.9506
AT4G35580	NAC	NTL9, CBNAC	NAC transcription factor-like ...		Lus10033251 [exp]	2.2	0.9484
AT1G76480			unknown protein		Lus10006035 [exp]	2.4	0.9458
AT5G24310		ABIL3	ABL interactor-like protein 3 ...		Lus10005919 [exp]	3.7	0.9443
AT2G01350		QPT	quinolinate phoshoribosyltrans...		Lus10018781 [exp]	3.7	0.9336
AT4G23050			PAS domain-containing protein ...		Lus10017844 [exp]	3.9	0.9335
					Lus10034398 [exp]	3.9	0.9533
					Lus10006087 [exp]	4.0	0.9436

Compare expression of checked genes

Lus10032646 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.